SMTL ID : 3twc.1

Crystal structure of broad and potent HIV-1 neutralizing antibody PGT127 in complex with Man9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MAN- MAN- MAN- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose

MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1: 12 residues within 4Å: Chain A: G.90, N.91, W.92, D.93 Chain B: W.64, T.65, Y.66, H.67, P.69, K.72, W.116 Ligands: AML.2 No protein-ligand interaction detected (PLIP)

1 x AML: AMYLAMINE(Non-covalent)

AML.2: 3 residues within 4Å: Chain B: D.115, W.116 Ligands: MAN-MAN-MAN-MAN-MAN-MAN-MAN-MAN.1 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pejchal, R. et al., A potent and broad neutralizing antibody recognizes and penetrates the HIV glycan shield. Science (2011)

Release Date

2011-10-19

Peptides

PGT127 light chain, Ig lambda-2 chain C regions: A
PGT127 heavy chain, Ig gamma-1 chain C region: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

PGT127 light chain, Ig lambda-2 chain C regions

PGT127 heavy chain, Ig gamma-1 chain C region