SMTL ID : 3twd.3 (2 other biounits)

glmuC1 in complex with an antibacterial inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.102, K.120, Y.135, N.155, K.161 Chain C: H.132 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Y.135, A:Y.135, A:N.155 Water bridges: A:R.102, A:R.102 Salt bridges: A:R.102, A:K.120, A:K.161, C:H.132 SO4.3: 6 residues within 4Å: Chain A: H.132 Chain B: R.102, K.120, Y.135, N.155, K.161 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.135, B:Y.135, B:N.155 Water bridges: B:R.102, B:R.102 Salt bridges: B:R.102, B:K.120, B:K.161, A:H.132 SO4.5: 6 residues within 4Å: Chain B: H.132 Chain C: R.102, K.120, Y.135, N.155, K.161 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:Y.135, C:Y.135, C:N.155 Water bridges: C:R.102, C:R.102 Salt bridges: C:R.102, C:K.120, C:K.161, B:H.132 SO4.7: 6 residues within 4Å: Chain D: R.102, K.120, Y.135, N.155, K.161 Chain E: H.132 11 PLIP interactions: 9 interactions with chain D, 2 interactions with chain E Hydrogen bonds: D:Y.135, D:N.155 Water bridges: D:R.102, D:R.102, D:K.161, D:K.161, E:H.132 Salt bridges: D:R.102, D:K.120, D:K.161, E:H.132 SO4.9: 6 residues within 4Å: Chain E: R.102, K.120, Y.135, N.155, K.161 Chain F: H.132 11 PLIP interactions: 9 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:Y.135, E:N.155 Water bridges: E:R.102, E:R.102, E:K.161, E:K.161, F:H.132 Salt bridges: E:R.102, E:K.120, E:K.161, F:H.132 SO4.11: 6 residues within 4Å: Chain D: H.132 Chain F: R.102, K.120, Y.135, N.155, K.161 11 PLIP interactions: 9 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:Y.135, F:N.155 Water bridges: F:R.102, F:R.102, F:K.161, F:K.161, D:H.132 Salt bridges: F:R.102, F:K.120, F:K.161, D:H.132

6 x GOB: 4-({5-[(4-aminophenyl)(phenyl)sulfamoyl]-2,4-dimethoxyphenyl}amino)-4-oxobutanoic acid(Non-covalent)

GOB.2: 20 residues within 4Å: Chain A: N.146, G.148, A.149, F.171, G.173, S.174, T.189, A.191, A.192, L.205, R.209 Chain B: C.154, N.155, Y.156, D.157, F.162, V.179, A.180 Chain C: W.218, P.221 21 PLIP interactions: 15 interactions with chain A, 4 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:F.171, A:F.171, A:T.189, A:A.191, A:L.205, A:L.205, C:W.218, C:W.218, C:P.221, B:V.179 Hydrogen bonds: A:N.146, A:N.146, A:A.149, A:S.174, A:A.192, A:R.209, A:R.209, B:Y.156 Water bridges: A:S.174 pi-Cation interactions: A:R.209 pi-Stacking: C:W.218 GOB.4: 20 residues within 4Å: Chain A: W.218, P.221 Chain B: N.146, G.148, A.149, F.171, G.173, S.174, T.189, A.191, A.192, L.205, R.209 Chain C: C.154, N.155, Y.156, D.157, F.162, V.179, A.180 21 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C, 15 interactions with chain B Hydrophobic interactions: A:W.218, A:W.218, A:P.221, C:V.179, B:F.171, B:F.171, B:T.189, B:A.191, B:L.205, B:L.205 pi-Stacking: A:W.218 Hydrogen bonds: C:Y.156, B:N.146, B:N.146, B:A.149, B:S.174, B:A.192, B:R.209, B:R.209 Water bridges: B:S.174 pi-Cation interactions: B:R.209 GOB.6: 20 residues within 4Å: Chain A: C.154, N.155, Y.156, D.157, F.162, V.179, A.180 Chain B: W.218, P.221 Chain C: N.146, G.148, A.149, F.171, G.173, S.174, T.189, A.191, A.192, L.205, R.209 21 PLIP interactions: 4 interactions with chain B, 15 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: B:W.218, B:W.218, B:P.221, C:F.171, C:F.171, C:T.189, C:A.191, C:L.205, C:L.205, A:V.179 pi-Stacking: B:W.218 Hydrogen bonds: C:N.146, C:N.146, C:A.149, C:S.174, C:A.192, C:R.209, C:R.209, A:Y.156 Water bridges: C:S.174 pi-Cation interactions: C:R.209 GOB.8: 20 residues within 4Å: Chain D: C.154, N.155, Y.156, D.157, F.162, V.179, A.180 Chain E: N.146, G.148, A.149, F.171, G.173, S.174, T.189, A.191, A.192, L.205, R.209 Chain F: W.218, P.221 18 PLIP interactions: 14 interactions with chain E, 2 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: E:F.171, E:F.171, E:T.189, E:L.205, E:L.205, D:V.179, F:W.218 Hydrogen bonds: E:N.146, E:N.146, E:A.149, E:S.174, E:A.192, E:R.209, E:R.209, D:Y.156 Water bridges: E:S.174 pi-Cation interactions: E:R.209 pi-Stacking: F:W.218 GOB.10: 20 residues within 4Å: Chain D: W.218, P.221 Chain E: C.154, N.155, Y.156, D.157, F.162, V.179, A.180 Chain F: N.146, G.148, A.149, F.171, G.173, S.174, T.189, A.191, A.192, L.205, R.209 18 PLIP interactions: 2 interactions with chain E, 14 interactions with chain F, 2 interactions with chain D Hydrophobic interactions: E:V.179, F:F.171, F:F.171, F:T.189, F:L.205, F:L.205, D:W.218 Hydrogen bonds: E:Y.156, F:N.146, F:N.146, F:A.149, F:S.174, F:A.192, F:R.209, F:R.209 Water bridges: F:S.174 pi-Cation interactions: F:R.209 pi-Stacking: D:W.218 GOB.12: 20 residues within 4Å: Chain D: N.146, G.148, A.149, F.171, G.173, S.174, T.189, A.191, A.192, L.205, R.209 Chain E: W.218, P.221 Chain F: C.154, N.155, Y.156, D.157, F.162, V.179, A.180 18 PLIP interactions: 14 interactions with chain D, 2 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: D:F.171, D:F.171, D:T.189, D:L.205, D:L.205, E:W.218, F:V.179 Hydrogen bonds: D:N.146, D:N.146, D:A.149, D:S.174, D:A.192, D:R.209, D:R.209, F:Y.156 Water bridges: D:S.174 pi-Cation interactions: D:R.209 pi-Stacking: E:W.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buurman, E.T. et al., In Vitro Validation of Acetyltransferase Activity of GlmU as an Antibacterial Target in Haemophilus influenzae. J.Biol.Chem. (2011)

Release Date

2011-10-19

Peptides

Bifunctional protein glmU: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
B

E
B

F
B

Bifunctional protein glmU

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