SMTL ID : 3tx1.1

X-ray crystal structure of Listeria monocytogenes EGD-e UDP-N-acetylenolpyruvylglucosamine reductase (MurB)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: Y.48, I.83, G.85, N.86, G.87, S.88, N.89, L.90, L.104, S.121, I.146, P.147, G.148, S.149, G.151, G.152, A.153, H.155, M.156, A.158, G.159, A.160, R.194, Y.203, I.204, V.205, R.231, Q.235, S.241, C.242, G.243, F.280, K.316 Ligands: GOL.2, SO4.4 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.48, A:P.147, A:F.280 Hydrogen bonds: A:G.85, A:N.86, A:G.87, A:S.88, A:S.88, A:N.89, A:N.89, A:S.121, A:S.149, A:S.149, A:G.152, A:G.159, A:G.159, A:V.205, A:V.205, A:R.231, A:R.231 Water bridges: A:G.151, A:G.151, A:Q.235

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.194, S.244, E.314 Ligands: FAD.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.194, A:S.244, A:S.244 Water bridges: A:Q.235 GOL.3: 5 residues within 4Å: Chain A: A.160, Y.161, G.162, R.194, R.248 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.161, A:G.162, A:R.248

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: H.155, A.199, K.316 Ligands: FAD.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.155, A:K.316 SO4.5: 6 residues within 4Å: Chain A: S.244, R.248, F.253, A.254, G.255, H.277 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.244, A:A.254, A:G.255 Salt bridges: A:R.248, A:H.277

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippova, E.V. et al., X-ray crystal structure of Listeria monocytogenes EGD-e UDP-N-acetylenolpyruvylglucosamine reductase (MurB). TO BE PUBLISHED

Release Date

2011-10-05

Peptides

UDP-N-acetylenolpyruvoylglucosamine reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylenolpyruvoylglucosamine reductase