SMTL ID : 3tx8.1

Crystal structure of a succinyl-diaminopimelate desuccinylase (ArgE) from Corynebacterium glutamicum ATCC 13032 at 2.97 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.97 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.256, W.320 Chain B: H.191, N.243 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.243, A:W.320 Salt bridges: B:H.191, A:R.256 PO4.3: 4 residues within 4Å: Chain A: H.191, N.243 Chain B: R.256, W.320 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.243, B:W.320 Salt bridges: A:H.191, B:R.256

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.317, F.318, G.319 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: K.317, F.318, G.319 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brunger, A.T. et al., Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum. Acta Crystallogr.,Sect.D (2012)

Release Date

2011-10-26

Peptides

Succinyl-diaminopimelate desuccinylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Succinyl-diaminopimelate desuccinylase