SMTL ID : 3tx9.1

OYE1 complexed with 2-(Hydroxymethyl)-cyclopent-2-enone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 20 residues within 4Å: Chain A: P.35, P.36, L.37, T.38, G.73, Q.115, H.192, N.195, R.244, V.293, P.296, F.297, G.325, N.326, Y.347, G.348, R.349, F.375, Y.376 Ligands: 3RN.3 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:L.37, A:P.296, A:F.297, A:R.349, A:F.375, A:F.375, A:Y.376 Hydrogen bonds: A:P.36, A:T.38, A:G.73, A:Q.115, A:Q.115, A:N.195, A:R.244, A:R.244, A:N.326, A:G.348, A:R.349 Water bridges: A:E.300, A:G.325, A:F.327, A:R.349, A:F.350 Salt bridges: A:R.349 FMN.4: 20 residues within 4Å: Chain B: P.35, P.36, L.37, T.38, G.73, Q.115, H.192, N.195, R.244, V.293, P.296, F.297, G.325, N.326, Y.347, G.348, R.349, F.375, Y.376 Ligands: 3RN.6 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:L.37, B:P.296, B:F.297, B:R.349, B:F.375, B:F.375, B:Y.376 Hydrogen bonds: B:P.36, B:T.38, B:T.38, B:G.73, B:Q.115, B:Q.115, B:N.195, B:R.244, B:R.244, B:N.326, B:G.348, B:R.349 Water bridges: B:G.325, B:F.327, B:R.349, B:R.349, B:F.350 Salt bridges: B:R.349

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

2 x 3RN: 2-(hydroxymethyl)cyclopent-2-en-1-one(Non-covalent)

3RN.3: 9 residues within 4Å: Chain A: T.38, W.117, H.192, N.195, Y.197, F.251, P.296, Y.376 Ligands: FMN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.117, A:Y.197, A:F.251 Hydrogen bonds: A:N.195 Water bridges: A:N.195 3RN.6: 9 residues within 4Å: Chain B: T.38, W.117, H.192, N.195, Y.197, F.251, P.296, Y.376 Ligands: FMN.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.117, B:Y.197, B:F.251 Hydrogen bonds: B:N.195, B:Y.197 Water bridges: B:N.195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pompeu, Y.A. et al., Studies of Enantioselectivity in OYE1. To be Published

Release Date

2011-10-05

Peptides

NADPH dehydrogenase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NADPH dehydrogenase 1

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