SMTL ID : 3txm.1

Crystal structure of Rpn6 from Drosophila melanogaster, Gd(3+) complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

4 x GD3: GADOLINIUM ION(Non-covalent)

GD3.1: 2 residues within 4Å: Chain A: D.237, D.238 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.238, A:D.238 GD3.2: 2 residues within 4Å: Chain A: E.206, E.209 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.206, A:E.206 GD3.3: 1 residues within 4Å: Chain A: E.354 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.354 GD3.4: 1 residues within 4Å: Chain A: E.280 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.280

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: S.53, K.54 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.54 Salt bridges: A:K.54 SO4.6: 3 residues within 4Å: Chain A: S.270, A.272, R.309 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pathare, G.R. et al., The proteasomal subunit Rpn6 is a molecular clamp holding the core and regulatory subcomplexes together. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2011-12-14

Peptides

26S proteasome regulatory complex subunit p42B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

26S proteasome regulatory complex subunit p42B

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