SMTL ID : 3ty0.1

Structure of PPARgamma ligand binding domain in complex with (R)-5-(3-((3-(6-methoxybenzo[d]isoxazol-3-yl)-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-1-yl)methyl)phenyl)-5-methyloxazolidine-2,4-dione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x 082: (5R)-5-(3-{[3-(6-methoxy-1,2-benzoxazol-3-yl)-2-oxo-2,3-dihydro-1H-benzimidazol-1-yl]methyl}phenyl)-5-methyl-1,3-oxazolidine-2,4-dione(Non-covalent)

082.1: 15 residues within 4Å: Chain A: F.26, H.66, G.84, C.85, R.88, S.89, A.92, I.126, M.129, L.130, L.133, V.139, I.141, S.142, M.164 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.88, A:A.92, A:I.126, A:L.130, A:L.133, A:V.139, A:I.141 Hydrogen bonds: A:R.88, A:S.142 pi-Cation interactions: A:R.88 082.2: 15 residues within 4Å: Chain B: F.64, H.66, G.84, C.85, R.88, S.89, A.92, I.126, M.129, L.130, L.133, V.139, I.141, S.142, M.164 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:R.88, B:A.92, B:I.126, B:M.129, B:L.130, B:L.133, B:I.141, B:I.141 Hydrogen bonds: B:H.66, B:R.88, B:S.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, W. et al., Benzimidazolones: a new class of selective peroxisome proliferator-activated receptor gamma (PPAR-gamma) modulators. J.Med.Chem. (2011)

Release Date

2011-11-23

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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