SMTL ID : 3typ.1

The crystal structure of the inorganic triphosphatase NE1496

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: P.132, F.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.134 NA.2: 6 residues within 4Å: Chain A: G.82, R.83, H.108, A.150, L.151, S.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.84, A:A.150 NA.3: 2 residues within 4Å: Chain A: H.108, S.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.110 NA.4: 1 residues within 4Å: Chain A: D.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.96 NA.6: 2 residues within 4Å: Chain B: P.132, F.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.132 NA.7: 7 residues within 4Å: Chain B: G.82, R.83, R.84, H.108, A.150, L.151, S.152 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.82, B:R.84 NA.8: 2 residues within 4Å: Chain B: H.108, S.110 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.110 NA.9: 1 residues within 4Å: Chain B: D.96 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.96

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: R.84, V.85, E.86, A.106, G.107, H.108, L.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.86, A:E.86 Water bridges: A:R.84, A:H.108 EDO.10: 7 residues within 4Å: Chain B: R.84, V.85, E.86, A.106, G.107, H.108, L.109 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.86, B:E.86, B:E.86 Water bridges: B:H.108 EDO.11: 5 residues within 4Å: Chain A: T.71, Q.72, M.75 Chain B: I.66, Q.67 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delvaux, D. et al., A specific inorganic triphosphatase from Nitrosomonas europaea: structure and catalytic mechanism. J.Biol.Chem. (2011)

Release Date

2012-05-09

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein