SMTL ID : 3tzk.1

Crystal structure of 3-ketoacyl-(acyl-carrier-protein) reductase (FabG)(G92A) from Vibrio cholerae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.22, G.23, K.26 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.23 Water bridges: A:G.23 Salt bridges: A:K.26 SO4.2: 4 residues within 4Å: Chain A: K.106, E.107, E.108 Chain C: K.126 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:E.107, A:E.108 Water bridges: A:M.105, C:K.126, C:K.126, C:K.126 Salt bridges: C:K.126 SO4.3: 5 residues within 4Å: Chain A: S.21, R.22, A.43, T.44, S.45 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.21, A:T.44, A:S.45, A:S.45 Water bridges: A:G.19, A:S.21 Salt bridges: A:R.22 SO4.4: 5 residues within 4Å: Chain A: S.5, R.35 Chain B: S.5, F.7, R.35 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.5, B:S.5, A:S.5, A:S.5 Salt bridges: B:R.35, A:R.35 SO4.12: 2 residues within 4Å: Chain B: K.106, E.107 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Water bridges: D:K.126 Salt bridges: D:K.126 Hydrogen bonds: B:E.107 SO4.13: 2 residues within 4Å: Chain B: I.96, R.98 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.98 Salt bridges: B:R.98 SO4.14: 1 residues within 4Å: Chain B: K.26 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.26 SO4.20: 3 residues within 4Å: Chain C: R.22, G.23, K.26 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.23 Water bridges: C:G.23 Salt bridges: C:K.26 SO4.21: 4 residues within 4Å: Chain A: K.126 Chain C: K.106, E.107, E.108 7 PLIP interactions: 3 interactions with chain C, 4 interactions with chain A Hydrogen bonds: C:E.107, C:E.108 Water bridges: C:M.105, A:K.126, A:K.126, A:K.126 Salt bridges: A:K.126 SO4.22: 5 residues within 4Å: Chain C: S.21, R.22, A.43, T.44, S.45 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.21, C:T.44, C:S.45, C:S.45 Water bridges: C:G.19, C:S.21 Salt bridges: C:R.22 SO4.23: 5 residues within 4Å: Chain C: S.5, R.35 Chain D: S.5, F.7, R.35 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:S.5, C:S.5, D:S.5, D:S.5 Salt bridges: C:R.35, D:R.35 SO4.31: 2 residues within 4Å: Chain D: K.106, E.107 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Water bridges: B:K.126 Salt bridges: B:K.126 Hydrogen bonds: D:E.107 SO4.32: 2 residues within 4Å: Chain D: I.96, R.98 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.98 Salt bridges: D:R.98 SO4.33: 1 residues within 4Å: Chain D: K.26 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:K.26

24 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 4 residues within 4Å: Chain A: F.190, L.199, T.207 Ligands: UNX.6 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Ligands: UNX.5, UNX.7 Ligand excluded by PLIP UNX.7: 3 residues within 4Å: Chain A: D.99 Ligands: UNX.6, UNX.8 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: G.154 Ligands: UNX.7, UNX.9 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Ligands: UNX.8, UNX.10 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: D.99 Ligands: UNX.9, UNX.11 Ligand excluded by PLIP UNX.11: 1 residues within 4Å: Ligands: UNX.10 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain B: L.199, T.207 Ligands: UNX.16 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Ligands: UNX.15, UNX.17 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain B: D.99 Ligands: UNX.16, UNX.18 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain B: G.154 Ligands: UNX.17, UNX.19 Ligand excluded by PLIP UNX.19: 1 residues within 4Å: Ligands: UNX.18 Ligand excluded by PLIP UNX.24: 4 residues within 4Å: Chain C: F.190, L.199, T.207 Ligands: UNX.25 Ligand excluded by PLIP UNX.25: 2 residues within 4Å: Ligands: UNX.24, UNX.26 Ligand excluded by PLIP UNX.26: 3 residues within 4Å: Chain C: D.99 Ligands: UNX.25, UNX.27 Ligand excluded by PLIP UNX.27: 3 residues within 4Å: Chain C: G.154 Ligands: UNX.26, UNX.28 Ligand excluded by PLIP UNX.28: 2 residues within 4Å: Ligands: UNX.27, UNX.29 Ligand excluded by PLIP UNX.29: 3 residues within 4Å: Chain C: D.99 Ligands: UNX.28, UNX.30 Ligand excluded by PLIP UNX.30: 1 residues within 4Å: Ligands: UNX.29 Ligand excluded by PLIP UNX.34: 3 residues within 4Å: Chain D: L.199, T.207 Ligands: UNX.35 Ligand excluded by PLIP UNX.35: 2 residues within 4Å: Ligands: UNX.34, UNX.36 Ligand excluded by PLIP UNX.36: 3 residues within 4Å: Chain D: D.99 Ligands: UNX.35, UNX.37 Ligand excluded by PLIP UNX.37: 3 residues within 4Å: Chain D: G.154 Ligands: UNX.36, UNX.38 Ligand excluded by PLIP UNX.38: 1 residues within 4Å: Ligands: UNX.37 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, J. et al., Dissecting the Structural Elements for the Activation of beta-Ketoacyl-(Acyl Carrier Protein) Reductase from Vibrio cholerae. J.Bacteriol. (2015)

Release Date

2011-10-19

Peptides

3-oxoacyl-[acyl-carrier protein] reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

3-oxoacyl-[acyl-carrier protein] reductase