SMTL ID : 3tzt.1

The structure of a protein in glycosyl transferase family 8 from Anaerococcus prevotii.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: D.119, T.123, Y.213 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.119, A:Y.206, A:Y.213 EDO.2: 6 residues within 4Å: Chain A: D.6, A.7, E.103, I.104, L.105, L.121 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.6, A:A.7, A:A.7, A:L.105 EDO.4: 4 residues within 4Å: Chain A: M.4, D.37, T.63, Y.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.63, A:Y.65 EDO.5: 6 residues within 4Å: Chain A: K.265, M.268, S.269, K.272 Chain B: A.234, D.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.272 EDO.6: 5 residues within 4Å: Chain B: D.6, A.7, I.104, L.105, L.121 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.7, B:L.105 Water bridges: B:D.6, B:L.121 EDO.7: 6 residues within 4Å: Chain B: D.108, D.110, H.244, C.246, G.247, K.250 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.108, B:D.108, B:G.247, B:K.250, B:K.250 EDO.8: 6 residues within 4Å: Chain B: H.135, D.210, N.214, D.216, H.244, C.246 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.135, B:D.210, B:N.214

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 5 residues within 4Å: Chain A: R.257, N.258, K.259 Chain B: R.257, K.259 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Water bridges: A:N.258, A:K.259, B:K.259 Salt bridges: A:R.257, A:K.259, B:R.257, B:K.259, B:K.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The structure of a protein in glycosyl transferase family 8 from Anaerococcus prevotii. TO BE PUBLISHED

Release Date

2011-12-07

Peptides

Glycosyl transferase family 8: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycosyl transferase family 8