SMTL ID : 3u02.1 (6 other biounits)

Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: D.185, K.186, W.187, R.201, K.224 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.185, A:D.185, A:K.186, A:W.187 Water bridges: A:R.201, A:R.201 Salt bridges: A:R.201, A:K.224 SO4.2: 6 residues within 4Å: Chain A: T.172, P.173, R.174, P.207, H.208, G.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.174, A:G.209 Salt bridges: A:R.174, A:H.208 SO4.3: 7 residues within 4Å: Chain A: D.185, Y.199, K.200, R.201, T.202, K.224 Chain C: E.155 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:R.201, A:T.202, A:T.202, C:E.155 Water bridges: A:D.197, A:R.201, A:R.201, A:T.202 Salt bridges: A:R.201, A:K.224 SO4.4: 7 residues within 4Å: Chain A: D.185, S.188, Y.189 Chain B: E.34, P.35, L.36, K.63 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:E.34, A:D.185, A:D.185 Salt bridges: B:K.63 Water bridges: A:N.195 SO4.7: 4 residues within 4Å: Chain A: T.192 Chain B: M.1, D.65, E.66 8 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A, 1 interactions with chain C Hydrogen bonds: B:E.66, B:E.66, A:T.192, A:T.192 Water bridges: A:Y.193, A:Y.193, A:Y.193, C:E.101 SO4.8: 5 residues within 4Å: Chain B: D.185, K.186, W.187, R.201, K.224 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.186, B:W.187 Water bridges: B:K.224, B:K.224 Salt bridges: B:R.201, B:K.224 SO4.9: 8 residues within 4Å: Chain B: D.9, G.94, F.137, K.138, L.139, G.140, G.142, I.143 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.9, B:K.138, B:K.138, B:G.140, B:G.142, B:I.143 Water bridges: B:G.94, B:G.142 SO4.10: 4 residues within 4Å: Chain B: P.173, R.174, H.208, G.209 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.174, B:G.209 Salt bridges: B:R.174, B:H.208 SO4.11: 8 residues within 4Å: Chain B: D.185, D.197, Y.199, K.200, R.201, T.202, K.224 Chain D: E.155 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:D.185, B:R.201, B:T.202, B:T.202, B:T.202, D:E.155 Water bridges: B:K.224 Salt bridges: B:R.201, B:K.224 SO4.13: 5 residues within 4Å: Chain C: T.172, P.173, R.174, H.208, G.209 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.174, C:G.209 Salt bridges: C:R.174, C:H.208 SO4.14: 7 residues within 4Å: Chain C: H.117, V.118, T.119, I.120, E.121, R.141, I.144 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:I.120 Salt bridges: C:H.117, C:R.141 SO4.16: 5 residues within 4Å: Chain D: T.172, P.173, R.174, H.208, G.209 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.172, D:R.174, D:G.209 Salt bridges: D:R.174, D:H.208 SO4.17: 5 residues within 4Å: Chain D: D.185, K.186, W.187, R.201, K.224 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:K.186, D:W.187 Water bridges: D:R.201, D:D.221, D:K.224, D:K.224 Salt bridges: D:R.201, D:K.224 SO4.18: 8 residues within 4Å: Chain B: E.155 Chain D: D.185, D.197, Y.199, K.200, R.201, T.202, K.224 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.197, D:R.201, D:T.202, D:T.202 Salt bridges: D:R.201, D:K.224

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.5: 9 residues within 4Å: Chain A: T.19, E.160, L.162, I.205, P.207, D.211, V.213, R.218, Q.248 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.19 Hydrogen bonds: A:T.19, A:Q.248 Water bridges: A:T.19, A:T.19 Salt bridges: A:R.218 CIT.12: 13 residues within 4Å: Chain B: M.16, T.19, L.41, R.43, Y.50, E.160, L.162, I.205, P.207, D.211, V.213, R.218, Q.248 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.50 Hydrogen bonds: B:T.19, B:Q.248 Water bridges: B:T.19, B:D.211, B:D.211 Salt bridges: B:R.43, B:R.218 CIT.19: 11 residues within 4Å: Chain D: M.16, T.19, L.41, R.43, E.160, L.162, I.205, D.211, V.213, R.218, Q.248 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.162 Hydrogen bonds: D:R.43, D:E.160, D:R.218, D:Q.248 Water bridges: D:T.19 Salt bridges: D:R.43

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 7 residues within 4Å: Chain A: M.1, I.64, D.65, E.66 Chain B: T.192 Chain D: G.100, E.101 7 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: A:E.66, A:E.66, A:E.66, B:Y.193, D:E.101, D:E.101 Salt bridges: D:E.101

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.15: 4 residues within 4Å: Chain C: D.185, K.186, W.187, R.201 7 PLIP interactions: 1 interactions with chain A, 6 interactions with chain C Water bridges: A:L.154 Hydrophobic interactions: C:K.186 Hydrogen bonds: C:D.185, C:K.186, C:W.187 Salt bridges: C:R.201, C:K.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzin, A. et al., Crystal Structure of the tRNA modifier TiaS from Pyrococcus furiosus, Northeast Structural Genomics Consortium Target PfR225. To be Published

Release Date

2011-11-02

Peptides

Putative transcription-associated protein TFIIS: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Putative transcription-associated protein TFIIS

Related Entries With Identical Sequence