SMTL ID : 3u04.1

Crystal structure of peptide deformylase from ehrlichia chaffeensis in complex with actinonin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.53, C.113, H.155, H.159 Ligands: BB2.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.113, A:H.155, A:H.159 ZN.5: 5 residues within 4Å: Chain B: Q.53, C.113, H.155, H.159 Ligands: BB2.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.113, B:H.155, B:H.159

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: L.169, S.170, K.173 Chain B: L.169, S.170, K.173 Ligands: CL.6 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: K.108 Chain B: Y.119, F.176, K.180 Ligand excluded by PLIP CL.6: 7 residues within 4Å: Chain A: L.169, S.170, K.173 Chain B: L.169, S.170, K.173 Ligands: CL.2 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: Y.119, F.176, K.180 Chain B: K.108 Ligand excluded by PLIP

2 x BB2: ACTINONIN(Non-covalent)

BB2.4: 17 residues within 4Å: Chain A: Q.45, G.46, L.47, G.48, Q.53, K.110, E.111, G.112, C.113, L.114, F.120, W.148, R.151, H.155, E.156, H.159 Ligands: ZN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.47, A:E.111, A:L.114, A:F.120, A:W.148, A:R.151, A:H.155 Hydrogen bonds: A:L.47, A:G.48, A:Q.53, A:G.112, A:G.112, A:L.114 BB2.8: 17 residues within 4Å: Chain B: Q.45, G.46, L.47, G.48, Q.53, K.110, E.111, G.112, C.113, L.114, F.120, W.148, R.151, H.155, E.156, H.159 Ligands: ZN.5 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.47, B:E.111, B:L.114, B:F.120, B:W.148, B:R.151, B:H.155 Hydrogen bonds: B:L.47, B:G.48, B:Q.53, B:G.112, B:G.112, B:L.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Seattle Structural Genomics Center for Infectious Disease (SSGCID) et al., Crystal structure of peptide deformylase from ehrlichia chaffeensis in complex with actinonin. To be Published

Release Date

2011-10-12

Peptides

Peptide deformylase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Peptide deformylase 1