SMTL ID : 3u1s.1

Crystal structure of human Fab PGT145, a broadly reactive and potent HIV-1 neutralizing antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.64, R.70 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.64, A:Q.67 Salt bridges: A:R.64, A:R.70 SO4.2: 3 residues within 4Å: Chain A: T.77, H.78, R.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79 Salt bridges: A:R.79 SO4.3: 1 residues within 4Å: Chain A: K.213 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.213 SO4.4: 4 residues within 4Å: Chain A: G.66, Q.67, T.68, R.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.68 Water bridges: A:Q.67 Salt bridges: A:R.70 SO4.6: 5 residues within 4Å: Chain B: R.95, D.96, S.97, G.98, A.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.98, B:A.99 Salt bridges: B:R.95 SO4.7: 4 residues within 4Å: Chain B: H.76, E.77, K.124, R.126 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.126 Water bridges: B:K.124, B:K.124 Salt bridges: B:H.76, B:K.124

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: P.28, L.29, F.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.27, A:L.29, A:F.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McLellan, J.S. et al., Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9. Nature (2011)

Release Date

2011-12-07

Peptides

Fab PGT145 Light chain: A
Fab PGT145 Heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Fab PGT145 Light chain

Fab PGT145 Heavy chain

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