SMTL ID : 3u2t.1

Crystal Structure of Human Glycogenin-1 (GYG1) complexed with manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.124, D.126, H.234, L.236 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.124, A:D.126, A:H.234, H2O.1, H2O.1 MN.6: 4 residues within 4Å: Chain B: D.124, D.126, H.234, L.236 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.124, B:D.126, B:H.234, H2O.6, H2O.6

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: R.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.55, A:R.55 EDO.3: 6 residues within 4Å: Chain A: E.141, L.142, F.193, S.195, W.196, K.203 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.142, A:K.203, A:K.203 EDO.4: 4 residues within 4Å: Chain A: T.115, S.164, V.165, E.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.165, A:E.166 Water bridges: A:T.115 EDO.5: 2 residues within 4Å: Chain A: H.51, N.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.51, A:N.132 Water bridges: A:N.132 EDO.7: 1 residues within 4Å: Chain B: R.55 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.55, B:R.55 EDO.8: 6 residues within 4Å: Chain B: E.141, L.142, F.193, S.195, W.196, K.203 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.142, B:K.203, B:K.203 EDO.9: 4 residues within 4Å: Chain B: T.115, S.164, V.165, E.166 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.165, B:E.166 Water bridges: B:T.115 EDO.10: 2 residues within 4Å: Chain B: H.51, N.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.51, B:N.132 Water bridges: B:N.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Conformational plasticity of glycogenin and its maltosaccharide substrate during glycogen biogenesis. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-11-02

Peptides

Glycogenin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogenin-1