SMTL ID : 3u3l.1

Crystal structure of the selenomethionine derivative of tablysin-15

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 10 residues within 4Å: Chain A: K.47, D.50, V.51, H.54, F.109, A.126, V.127, G.130, H.131, A.160 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.51, A:V.51, A:H.54, A:F.109, A:A.126, A:V.127, A:A.160 Salt bridges: A:H.54, A:H.131

1 x PR: PRASEODYMIUM ION(Non-covalent)

PR.2: 3 residues within 4Å: Chain A: E.35 Ligands: CIT.3, CIT.4 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.35, H2O.6, H2O.6

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 6 residues within 4Å: Chain A: E.35, L.37, K.38, R.41 Ligands: PR.2, CIT.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.38 Salt bridges: A:R.41, A:R.41 CIT.4: 5 residues within 4Å: Chain A: E.35, R.41, K.82 Ligands: PR.2, CIT.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.41 Water bridges: A:E.35, A:L.36, A:A.78 Salt bridges: A:R.41, A:K.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structure of protein having inhibitory disintegrin and leukotriene scavenging functions contained in single domain. J.Biol.Chem. (2012)

Release Date

2012-02-15

Peptides

Tablysin 15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Tablysin 15

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