SMTL ID : 3u3u.1

Crystal structure of the tablysin-15-leukotriene E4 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x PR: PRASEODYMIUM ION(Non-covalent)

PR.1: 3 residues within 4Å: Chain A: E.35 Ligands: CIT.2, CIT.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.35

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: E.35, L.37, K.38, R.41 Ligands: PR.1, CIT.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.38 Salt bridges: A:K.38, A:R.41, A:R.41 CIT.3: 5 residues within 4Å: Chain A: E.35, R.41, K.82 Ligands: PR.1, CIT.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.41 Salt bridges: A:R.41, A:K.82

1 x EAH: (5S,7E,9E,11Z,14Z)-5-hydroxyicosa-7,9,11,14-tetraenoic acid(Non-covalent)

EAH.4: 14 residues within 4Å: Chain A: K.47, D.50, V.51, H.54, W.60, F.109, A.126, V.127, G.130, H.131, K.134, E.156, A.160, C.187 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.51, A:F.109, A:A.126, A:V.127, A:V.127, A:H.131, A:A.160 Salt bridges: A:H.54, A:H.131, A:K.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structure of protein having inhibitory disintegrin and leukotriene scavenging functions contained in single domain. J.Biol.Chem. (2012)

Release Date

2012-02-15

Peptides

Tablysin 15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Tablysin 15

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