SMTL ID : 3u41.3 (7 other biounits)

Crystal structure of Escherichia coli DmsD in space group P212121

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.101, F.102, N.125, E.126, P.127 Ligands: TRS.9 No protein-ligand interaction detected (PLIP) GOL.2: 2 residues within 4Å: Chain A: R.164, E.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.164, A:R.164, A:D.167 GOL.3: 1 residues within 4Å: Chain A: W.156 No protein-ligand interaction detected (PLIP) GOL.4: 2 residues within 4Å: Chain A: L.107, R.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.110 GOL.5: 6 residues within 4Å: Chain A: T.5, H.6, F.7, E.151, Q.195, L.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.151, A:Q.195 GOL.6: 2 residues within 4Å: Chain A: R.18, E.143 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.143 GOL.7: 5 residues within 4Å: Chain A: G.145, R.146, Q.147, T.148, E.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.147, A:T.148, A:T.148, A:E.149 GOL.8: 8 residues within 4Å: Chain A: S.8, Q.9, Q.10, D.11, N.12, F.13, S.14, V.15 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.8, A:N.12, A:S.14, A:S.14, A:V.15

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.9: 6 residues within 4Å: Chain A: Y.25, W.75, F.79, W.90, E.126 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.25, A:E.126

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 2 residues within 4Å: Chain A: Q.10, D.11 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2013-02-06

Peptides

Twin-arginine leader-binding protein dmsD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Twin-arginine leader-binding protein dmsD

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