SMTL ID : 3u4c.1

Crystal structure of YwfH, NADPH dependent reductase involved in Bacilysin biosynthesis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 28 residues within 4Å: Chain A: G.30, S.32, Q.33, G.34, I.35, N.53, S.54, R.55, N.56, G.81, D.82, M.83, S.84, N.109, I.110, P.111, G.112, K.133, Y.137, I.159, V.160, P.204, G.205, F.206, I.207, T.209, D.210, R.211 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:G.30, A:S.32, A:S.32, A:Q.33, A:Q.33, A:Q.33, A:I.35, A:S.54, A:R.55, A:N.56, A:D.82, A:M.83, A:S.84, A:N.109, A:I.110, A:G.112, A:G.205, A:I.207, A:T.209, A:T.209, A:D.210, A:R.211 Water bridges: A:G.36, A:R.55, A:S.84, A:D.210, A:R.211, A:R.211 Salt bridges: A:R.55, A:R.211, A:R.211 NDP.2: 28 residues within 4Å: Chain B: G.30, S.32, Q.33, G.34, I.35, N.53, S.54, R.55, N.56, G.81, D.82, M.83, S.84, N.109, I.110, P.111, G.112, K.133, Y.137, I.159, V.160, P.204, G.205, F.206, I.207, T.209, D.210, R.211 31 PLIP interactions: 31 interactions with chain B Hydrogen bonds: B:G.30, B:S.32, B:S.32, B:Q.33, B:Q.33, B:Q.33, B:I.35, B:S.54, B:R.55, B:N.56, B:D.82, B:M.83, B:S.84, B:N.109, B:I.110, B:G.112, B:G.205, B:I.207, B:T.209, B:T.209, B:D.210, B:R.211 Water bridges: B:G.36, B:R.55, B:S.84, B:D.210, B:R.211, B:R.211 Salt bridges: B:R.55, B:R.211, B:R.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajavel, M. et al., Structural insights into the role of Bacillus subtilis YwfH (BacG) in tetrahydrotyrosine synthesis. Acta Crystallogr.,Sect.D (2013)

Release Date

2013-03-06

Peptides

Bacilysin biosynthesis oxidoreductase ywfH: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Bacilysin biosynthesis oxidoreductase ywfH

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