SMTL ID : 3u4w.1

Src in complex with DNA-templated macrocyclic inhibitor MC4b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FUM- ALC- PHE- 08M- DAB: macrocyclic inhibitor MC4B(Non-covalent)

FUM-ALC-PHE-08M-DAB.1: 26 residues within 4Å: Chain A: L.15, G.16, Q.17, G.18, C.19, F.20, G.21, E.22, V.23, A.35, K.37, T.38, L.39, T.80, E.81, Y.82, M.83, G.86, D.128, R.130, A.132, L.135, D.146, L.149, A.150, I.153 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:F.20, A:V.23, A:V.23, A:K.37, A:K.37, A:K.37, A:L.39, A:A.132, A:D.146, A:L.149, A:A.150, A:I.153 Hydrogen bonds: A:C.19, A:F.20, A:G.21, A:K.37, A:M.83, A:D.90, A:N.133 Water bridges: A:Q.17, A:G.86, A:R.130, A:N.133

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: G.207, M.208, V.209 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.208 Water bridges: A:G.207 GOL.8: 4 residues within 4Å: Chain A: P.5, R.6, E.7 Ligands: SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.6, A:E.7, A:E.7 GOL.9: 3 residues within 4Å: Chain A: S.45, P.46, E.47 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.47

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.6, E.73 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.6 SO4.4: 1 residues within 4Å: Chain A: K.14 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.14, A:K.14 Salt bridges: A:K.14 SO4.5: 5 residues within 4Å: Chain A: H.61, E.62, S.114, R.121, Q.255 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.62, A:S.114, A:R.121, A:Q.255 Salt bridges: A:H.61 SO4.6: 5 residues within 4Å: Chain A: Y.82, M.83, S.84, G.137, E.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.84, A:E.138 SO4.7: 2 residues within 4Å: Chain A: P.230, E.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.231 Water bridges: A:E.266, A:E.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Georghiou, G. et al., Highly specific, bisubstrate-competitive Src inhibitors from DNA-templated macrocycles. Nat.Chem.Biol. (2012)

Release Date

2012-02-22

Peptides

Proto-oncogene tyrosine-protein kinase Src: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene tyrosine-protein kinase Src

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