SMTL ID : 3u56.1

Crystal structure of mutant ribosomal protein T217V TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

11 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 6 residues within 4Å: Chain A: T.216, T.217, V.218, G.220 Chain B: C.71, A.72 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.216, A:T.217, A:G.220, H2O.1 MG.3: 1 residues within 4Å: Ligands: MG.4 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: G.6, C.7 Ligands: MG.3 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: G.52 Ligands: MG.7 No protein-ligand interaction detected (PLIP) MG.6: 2 residues within 4Å: Chain B: C.34, C.35 No protein-ligand interaction detected (PLIP) MG.7: 4 residues within 4Å: Chain B: G.52, G.53 Ligands: MG.5, MG.10 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain B: U.18, G.19, C.71 No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain B: G.21 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain B: G.53 Ligands: MG.7 No protein-ligand interaction detected (PLIP) MG.11: 5 residues within 4Å: Chain B: G.37, C.38, G.45, U.46 Ligands: MG.12 No protein-ligand interaction detected (PLIP) MG.12: 4 residues within 4Å: Chain B: C.36, U.46, G.47 Ligands: MG.11 No protein-ligand interaction detected (PLIP)

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.2: 5 residues within 4Å: Chain B: A.4, U.5, G.6, G.16, C.74 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tishchenko, S.V. et al., Crystal structure of ribosomal protein tthl1 in complex with 80nt 23s rna from thermus thermophilus. To be Published

Release Date

2012-10-31

Peptides

50S ribosomal protein L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L1

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