SMTL ID : 3u6a.1 (2 other biounits)

Rational Design and Synthesis of Aminopiperazinones as Beta Secretase (BACE) Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 18P: N-{3-[(2R)-6-amino-2,4-dimethyl-3-oxo-2,3,4,5-tetrahydropyrazin-2-yl]phenyl}-5-chloropyridine-2-carboxamide(Non-covalent)

18P.1: 16 residues within 4Å: Chain A: G.16, Q.17, G.18, L.35, D.37, G.39, Y.76, F.113, I.115, I.123, D.233, S.234, G.235, T.236, T.237, A.340 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.35, A:Y.76, A:Y.76, A:F.113, A:I.123 Hydrogen bonds: A:D.233, A:G.235, A:T.237 Water bridges: A:T.236

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: K.80, W.81, E.82, E.109, S.110, D.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.82 Salt bridges: A:K.80 SO4.3: 4 residues within 4Å: Chain A: L.68, K.70, L.85, L.138 No protein-ligand interaction detected (PLIP) SO4.4: 6 residues within 4Å: Chain A: T.280, P.281, W.282, N.283, D.368, F.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.282, A:N.283, A:N.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tresadern, G. et al., Rational design and synthesis of aminopiperazinones as beta-secretase (BACE) inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-11-09

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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