SMTL ID : 3u7b.1 (4 other biounits)

A new crystal structure of a Fusarium oxysporum GH10 xylanase reveals the presence of an extended loop on top of the catalytic cleft

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: N.101, Q.102, Q.105, V.147, I.148, A.151, R.158, S.195, Y.196 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.158, A:R.158

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: P.215, T.216, F.298, P.299, E.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.301, A:E.301 EDO.3: 5 residues within 4Å: Chain A: Y.174, N.175, H.208, R.249, W.293 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.249, A:R.249 Water bridges: A:N.175, A:N.175 EDO.4: 4 residues within 4Å: Chain A: N.175, Y.178, Q.217, T.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.217, A:T.219 EDO.5: 5 residues within 4Å: Chain A: T.252, P.295, P.299, G.300, E.301 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.252, A:T.252, A:G.300 EDO.6: 5 residues within 4Å: Chain A: D.289, P.295, G.302, S.303, D.309 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.303, A:D.309 Water bridges: A:D.309 EDO.7: 3 residues within 4Å: Chain A: V.23, R.24, Q.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.67, A:Q.67 Water bridges: A:N.25 EDO.8: 5 residues within 4Å: Chain A: Q.54, R.57, G.58, F.60, D.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.57, A:D.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dimarogona, M. et al., The structure of a GH10 xylanase from Fusarium oxysporum reveals the presence of an extended loop on top of the catalytic cleft. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-07-18

Peptides

ENDO-1,4-BETA-XYLANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA-XYLANASE

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