SMTL ID : 3u7r.1 (1 other biounit)

FerB - flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from Paracoccus denitrificans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x FNR: 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H-BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D-RIBITOL(Non-covalent)

FNR.1: 17 residues within 4Å: Chain A: S.11, R.13, S.16, L.17, N.18, P.76, E.77, Y.78, N.79, R.80, S.113, P.114 Chain B: Y.46, D.48, D.91, T.94, R.95 27 PLIP interactions: 23 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Y.78, B:Y.46, B:R.95 Hydrogen bonds: A:S.11, A:S.11, A:R.13, A:L.17, A:N.18, A:N.18, A:E.77, A:E.77, A:N.79, A:R.80, A:S.113, A:S.113 Water bridges: A:Y.78, A:N.79, A:R.80, A:R.80, A:R.80, A:R.80, A:G.115, A:G.115, B:R.95 Salt bridges: A:R.13 pi-Stacking: A:Y.78 pi-Cation interactions: B:R.95 FNR.3: 17 residues within 4Å: Chain A: Y.46, D.48, D.91, T.94, R.95 Chain B: S.11, R.13, S.16, L.17, N.18, P.76, E.77, Y.78, N.79, R.80, S.113, P.114 25 PLIP interactions: 21 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.78, A:Y.46, A:R.95 Hydrogen bonds: B:S.11, B:S.11, B:R.13, B:L.17, B:N.18, B:N.18, B:E.77, B:E.77, B:E.77, B:N.79, B:R.80, B:S.113, B:S.113 Water bridges: B:N.79, B:R.80, B:R.80, B:R.80, B:R.80, A:R.95 Salt bridges: B:R.13 pi-Stacking: B:Y.78 pi-Cation interactions: A:R.95

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.2: 11 residues within 4Å: Chain A: G.41, D.42, L.43, P.44, H.45, L.50 Chain B: G.41, D.42, L.43, P.44, H.45 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:H.45, B:H.45 Hydrogen bonds: B:D.42, B:D.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sedlacek, V. et al., The Structural and Functional Basis of Catalysis Mediated by NAD(P)H:acceptor Oxidoreductase (FerB) of Paracoccus denitrificans. Plos One (2014)

Release Date

2012-10-24

Peptides

NADPH-dependent FMN reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NADPH-dependent FMN reductase

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