SMTL ID : 3u8q.1

Crystal Structure of C-lobe of Bovine lactoferrin Complexed with Phenyl-Propanolamine at 1.97 A Resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

1 x LEU- GLU- ALA- CYS- ALA- PHE: C-terminal peptide of Lactotransferrin(Non-covalent)

LEU-GLU-ALA-CYS-ALA-PHE.1: 8 residues within 4Å: Chain A: D.37, I.40, V.41, T.60, K.63, C.64, A.329, K.333 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.37, A:I.40, A:V.41, A:T.60

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: L.132, N.135, E.323, T.326, A.327, N.330 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.326, A:N.330 NAG-NAG.3: 7 residues within 4Å: Chain A: K.75, L.93, N.204, D.205, W.208, E.209, E.214 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.75

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: Y.1, Q.23, S.24, N.27, Q.273, L.276 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.276 Hydrogen bonds: A:Y.1, A:N.27, A:Q.273

1 x FE: FE (III) ION(Non-covalent)

FE.5: 5 residues within 4Å: Chain A: D.54, Y.92, Y.185, H.254 Ligands: CO3.8 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.54, A:Y.92, A:Y.185, A:H.254

2 x ZN: ZINC ION(Non-covalent)

ZN.6: 2 residues within 4Å: Chain A: G.312, E.318 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.318, A:E.318, H2O.10 ZN.7: 1 residues within 4Å: Chain A: H.247 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.247

1 x CO3: CARBONATE ION(Non-functional Binders)

CO3.8: 10 residues within 4Å: Chain A: D.54, Y.92, T.118, R.122, T.123, A.124, G.125, Y.185, H.254 Ligands: FE.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.118, A:R.122

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 3 residues within 4Å: Chain A: K.100, R.229, R.237 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.229, A:R.229, A:R.237 Salt bridges: A:R.229, A:R.237

1 x NPU: (1R,2R)-2-amino-1-phenylpropan-1-ol(Non-covalent)

NPU.10: 8 residues within 4Å: Chain A: T.89, E.90, G.91, P.252, N.253, E.318, Y.319, L.320 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.252, A:N.253, A:Y.319 Water bridges: A:E.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shukla, P.K. et al., Crystal Structure of C-lobe of Bovine lactoferrin Complexed with Phenyl-Propanolamine at 1.97 A Resolution. To be Published

Release Date

2011-11-16

Peptides

Lactotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lactotransferrin

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