SMTL ID : 3u91.1

Structural Determinants of Trimerization Specificity in HIV-1 gp41 Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-trimer

Ligands

3 x JEF: O-(O-(2-AMINOPROPYL)-O'-(2-METHOXYETHYL)POLYPROPYLENE GLYCOL 500)(Non-covalent)

JEF.1: 6 residues within 4Å: Chain A: V.24, Y.27 Chain B: E.25, L.28, K.29, L.33 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:E.25, B:L.28, A:V.24, A:Y.27, A:Y.27 Water bridges: A:Y.27 JEF.2: 6 residues within 4Å: Chain B: V.24, Y.27 Chain C: E.25, L.28, K.29, L.33 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:V.24, B:Y.27, B:Y.27, C:E.25, C:L.28 Water bridges: B:Y.27 JEF.3: 6 residues within 4Å: Chain A: E.25, L.28, K.29, L.33 Chain C: V.24, Y.27 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:E.25, A:L.28, C:V.24, C:Y.27, C:Y.27 Water bridges: C:Y.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., Structural Determinants of Trimerization Specificity in HIV-1 gp41 Protein. To be Published

Release Date

2013-04-24

Peptides

Gp41: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Gp41