SMTL ID : 3u96.1 (2 other biounits)

Crystal Structure of YopHQ357F(Catalytic Domain, Residues 163-468) in complex with pNCS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x CSN: N,4-DIHYDROXY-N-OXO-3-(SULFOOXY)BENZENAMINIUM(Non-covalent)

CSN.1: 10 residues within 4Å: Chain A: F.67, I.70, C.241, R.242, A.243, G.244, V.245, G.246, R.247, Q.284 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.67, A:A.243 Hydrogen bonds: A:R.242, A:A.243, A:G.244, A:V.245, A:G.246, A:R.247, A:R.247, A:Q.284 Water bridges: A:E.128, A:R.242, A:Q.288 Salt bridges: A:R.247 CSN.3: 13 residues within 4Å: Chain B: F.67, I.70, D.194, F.195, C.241, R.242, A.243, G.244, V.245, G.246, R.247, I.281, Q.284 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.67, B:F.195, B:A.243, B:V.245 Hydrogen bonds: B:D.194, B:R.242, B:R.242, B:A.243, B:G.244, B:V.245, B:G.246, B:R.247, B:R.247 Water bridges: B:F.195, B:Q.288 Salt bridges: B:R.247

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.116, K.180, S.226, S.227, A.228 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.227, A:S.227, A:A.228 Salt bridges: A:R.116 SO4.4: 5 residues within 4Å: Chain B: R.116, K.180, S.226, S.227, A.228 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.226, B:S.227, B:A.228 Salt bridges: B:R.116, B:K.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ke, S. et al., Investigation of catalytic loop structure, dynamics, and function relationship of Yersinia protein tyrosine phosphatase by temperature-jump relaxation spectroscopy and X-ray structural determination. J.Phys.Chem.B (2012)

Release Date

2012-08-29

Peptides

Tyrosine-protein phosphatase yopH: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tyrosine-protein phosphatase yopH

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