SMTL ID : 3u9q.1

Ligand binding domain of PPARgamma complexed with Decanoic Acid and PGC-1a peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x SER- LEU- LEU- LYS- LYS- LEU- LEU- LEU- ALA: PGC-1a peptide(Non-covalent)

SER-LEU-LEU-LYS-LYS-LEU-LEU-LEU-ALA.1: 13 residues within 4Å: Chain A: Q.87, T.90, K.94, F.99, L.104, N.105, Q.107, V.108, L.111, K.112, P.260, L.261, E.264 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Q.87, A:T.90, A:F.99, A:L.104, A:Q.107, A:V.108, A:L.111, A:K.112, A:P.260 Hydrogen bonds: A:K.94, A:N.105, A:E.264, A:E.264, A:E.264 Water bridges: A:E.91, A:E.264

1 x DKA: DECANOIC ACID(Non-covalent)

DKA.2: 12 residues within 4Å: Chain A: A.71, I.74, F.75, C.78, S.82, H.116, L.149, F.153, F.156, H.242, L.262, Y.266 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.74, A:F.75, A:F.75, A:F.75, A:L.149, A:F.153, A:F.156 Hydrogen bonds: A:S.82, A:S.82 Salt bridges: A:H.116, A:H.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malapaka, R.R. et al., Identification and Mechanism of 10-Carbon Fatty Acid as Modulating Ligand of Peroxisome Proliferator-activated Receptors. J.Biol.Chem. (2012)

Release Date

2011-11-09

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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