SMTL ID : 3u9r.1

Crystal structure of P. aeruginosa 3-methylcrotonyl-CoA carboxylase (MCC), beta subunit

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-hexamer

Ligands

6 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 6 residues within 4Å: Chain A: E.468, V.491, E.494, A.495, K.498, L.502 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.495, A:K.498 Water bridges: A:E.494, A:E.494, A:K.498 1PE.4: 6 residues within 4Å: Chain B: E.468, V.491, E.494, A.495, K.498, L.502 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.495, B:K.498 Water bridges: B:E.494, B:E.494, B:K.498 1PE.7: 6 residues within 4Å: Chain C: E.468, V.491, E.494, A.495, K.498, L.502 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.495, C:K.498 Water bridges: C:E.494, C:E.494, C:K.498 1PE.10: 6 residues within 4Å: Chain D: E.468, V.491, E.494, A.495, K.498, L.502 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:A.495, D:K.498 Water bridges: D:E.494, D:E.494, D:K.498 1PE.13: 6 residues within 4Å: Chain E: E.468, V.491, E.494, A.495, K.498, L.502 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:A.495, E:K.498 Water bridges: E:E.494, E:E.494, E:K.498 1PE.16: 6 residues within 4Å: Chain F: E.468, V.491, E.494, A.495, K.498, L.502 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:A.495, F:K.498 Water bridges: F:E.494, F:E.494, F:K.498

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.117, K.290, Y.357, S.538 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.538 Water bridges: A:R.117, A:R.117, A:R.117, A:K.290, A:K.290, A:Y.357 Salt bridges: A:R.117, A:K.290 SO4.3: 2 residues within 4Å: Chain A: R.67, R.71 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.71, A:R.71, A:G.134 Salt bridges: A:R.67, A:R.71 SO4.5: 4 residues within 4Å: Chain B: R.117, K.290, Y.357, S.538 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.538 Water bridges: B:R.117, B:R.117, B:R.117, B:K.290, B:K.290, B:Y.357 Salt bridges: B:R.117, B:K.290 SO4.6: 2 residues within 4Å: Chain B: R.67, R.71 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.71, B:R.71, B:G.134 Salt bridges: B:R.67, B:R.71 SO4.8: 4 residues within 4Å: Chain C: R.117, K.290, Y.357, S.538 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.538 Water bridges: C:R.117, C:R.117, C:R.117, C:K.290, C:K.290, C:Y.357 Salt bridges: C:R.117, C:K.290 SO4.9: 2 residues within 4Å: Chain C: R.67, R.71 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.71, C:R.71, C:G.134 Salt bridges: C:R.67, C:R.71 SO4.11: 4 residues within 4Å: Chain D: R.117, K.290, Y.357, S.538 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:Y.357, D:S.538 Water bridges: D:R.117, D:R.117, D:R.117, D:K.290, D:K.290 Salt bridges: D:R.117, D:K.290 SO4.12: 2 residues within 4Å: Chain D: R.67, R.71 7 PLIP interactions: 7 interactions with chain D Water bridges: D:R.71, D:R.71, D:R.71, D:R.71, D:G.134 Salt bridges: D:R.67, D:R.71 SO4.14: 4 residues within 4Å: Chain E: R.117, K.290, Y.357, S.538 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:Y.357, E:S.538 Water bridges: E:R.117, E:R.117, E:R.117, E:K.290, E:K.290 Salt bridges: E:R.117, E:K.290 SO4.15: 2 residues within 4Å: Chain E: R.67, R.71 7 PLIP interactions: 7 interactions with chain E Water bridges: E:R.71, E:R.71, E:R.71, E:R.71, E:G.134 Salt bridges: E:R.67, E:R.71 SO4.17: 4 residues within 4Å: Chain F: R.117, K.290, Y.357, S.538 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:Y.357, F:S.538 Water bridges: F:R.117, F:R.117, F:R.117, F:K.290, F:K.290 Salt bridges: F:R.117, F:K.290 SO4.18: 2 residues within 4Å: Chain F: R.67, R.71 7 PLIP interactions: 7 interactions with chain F Water bridges: F:R.71, F:R.71, F:R.71, F:R.71, F:G.134 Salt bridges: F:R.67, F:R.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.S. et al., An unanticipated architecture of the 750-kDa {alpha}6{beta}6 holoenzyme of 3-methylcrotonyl-CoA carboxylase. Nature (2012)

Release Date

2011-12-14

Peptides

Methylcrotonyl-CoA carboxylase, beta-subunit: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
B

D
B

E
B

F
B

Methylcrotonyl-CoA carboxylase, beta-subunit

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