SMTL ID : 3uag.1

UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.182, H.183, K.198 Ligands: UMA.2 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.183, H2O.4, H2O.7, H2O.7, H2O.11

1 x UMA: URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE(Non-covalent)

UMA.2: 22 residues within 4Å: Chain A: I.11, G.14, L.15, T.16, D.35, T.36, R.37, S.71, P.72, G.73, I.74, G.137, N.138, G.140, S.159, F.161, Q.162, H.183, K.319, L.416, F.422 Ligands: MN.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:F.161, A:F.422 Hydrogen bonds: A:G.14, A:L.15, A:T.16, A:T.16, A:T.36, A:T.36, A:G.73, A:N.138, A:N.138, A:N.138, A:Q.162 Water bridges: A:G.17, A:T.36, A:R.37, A:R.37, A:S.71, A:K.115, A:K.115, A:G.137, A:D.182, A:R.186, A:K.319, A:K.319, A:K.319, A:K.319 Salt bridges: A:R.37, A:K.115, A:H.183, A:K.319

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 16 residues within 4Å: Chain A: S.112, N.113, G.114, K.115, S.116, T.117, E.157, N.178, H.267, N.271, R.302, D.317, K.319, A.320, S.325, A.328 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.114, A:G.114, A:K.115, A:S.116, A:T.117, A:T.117, A:N.178, A:N.271, A:N.271, A:D.317, A:K.319 Water bridges: A:K.115, A:N.268, A:N.268, A:K.319, A:K.319, A:K.319, A:T.321 Salt bridges: A:K.115, A:R.302, A:K.319, A:K.319 pi-Cation interactions: A:H.267, A:H.267

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 9 residues within 4Å: Chain A: C.99, A.102, Q.103, A.104, P.105, I.106, S.168, L.169, Q.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertrand, J.A. et al., Determination of the MurD mechanism through crystallographic analysis of enzyme complexes. J.Mol.Biol. (1999)

Release Date

2000-02-25

Peptides

PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (UDP-N-ACETYLMURAMOYL-L-ALANINE:D-GLUTAMATE LIGASE)

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