SMTL ID : 3ubb.2 (1 other biounit)

The crystal structure of GlpG in complex with a phosphonofluoridate inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-trimer

Ligands

3 x 3UB: propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate(Covalent)

3UB.1: 13 residues within 4Å: Chain A: M.59, H.60, F.63, N.64, S.95, F.107, G.108, G.109, L.110, S.111, G.112, F.155, H.164 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:M.59, A:F.63, A:F.107, A:F.155, A:F.155, A:H.164 Hydrogen bonds: A:H.60, A:N.64, A:S.111 3UB.2: 13 residues within 4Å: Chain B: M.59, H.60, F.63, N.64, S.95, F.107, G.108, G.109, L.110, S.111, G.112, F.155, H.164 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:M.59, B:F.63, B:F.107, B:F.155, B:F.155, B:H.164 Hydrogen bonds: B:H.60, B:N.64, B:S.111 3UB.3: 13 residues within 4Å: Chain C: M.59, H.60, F.63, N.64, S.95, F.107, G.108, G.109, L.110, S.111, G.112, F.155, H.164 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:M.59, C:F.63, C:F.107, C:F.155, C:F.155, C:H.164 Hydrogen bonds: C:H.60, C:N.64, C:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xue, Y. et al., Conformational Change in Rhomboid Protease GlpG Induced by Inhibitor Binding to Its S' Subsites. Biochemistry (2012)

Release Date

2012-06-13

Peptides

Rhomboid protease glpG: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Rhomboid protease glpG

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