SMTL ID : 3ubd.1

Structure of N-terminal domain of RSK2 kinase in complex with flavonoid glycoside SL0101

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x SL0: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H-chromen-3-yl 3,4-di-O-acetyl-6-deoxy-alpha-L-mannopyranoside(Non-covalent)

SL0.1: 21 residues within 4Å: Chain A: I.8, I.10, S.36, F.37, V.40, A.56, K.58, L.60, V.89, L.103, L.105, D.106, F.107, L.108, L.113, E.155, N.156, L.158, T.168, F.170, L.172 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.8, A:A.56, A:L.103, A:L.105, A:L.105, A:L.113, A:L.158, A:L.172 Hydrogen bonds: A:D.106, A:E.155 Water bridges: A:K.58 Salt bridges: A:K.58 pi-Stacking: A:F.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Utepbergenov, D. et al., Insights into the Inhibition of the p90 Ribosomal S6 Kinase (RSK) by the Flavonol Glycoside SL0101 from the 1.5 A Crystal Structure of the N-Terminal Domain of RSK2 with Bound Inhibitor. Biochemistry (2012)

Release Date

2012-09-05

Peptides

Ribosomal protein S6 kinase alpha-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal protein S6 kinase alpha-3