SMTL ID : 3ubg.3 (2 other biounits)

Crystal structure of Drosophila N-cadherin EC1-3, II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 2 residues within 4Å: Chain A: H.139 Chain B: H.139 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:H.139, B:H.139, H2O.11, H2O.11

6 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: N.100, E.102, D.134, D.136, D.185, Q.196 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.102, A:D.134, A:D.134, A:D.136, A:D.185 CA.3: 7 residues within 4Å: Chain A: E.13, E.61, D.98, V.99, D.101, D.136 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.13, A:E.61, A:V.99, A:D.101, A:D.136 CA.4: 6 residues within 4Å: Chain A: E.13, D.59, E.61, D.101, E.102 Ligands: CA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.13, A:D.59, A:D.101, A:E.102, H2O.3 CA.5: 6 residues within 4Å: Chain B: E.13, D.59, E.61, D.101, E.102 Ligands: CA.6 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.13, B:E.61, B:D.101, B:E.102, H2O.9 CA.6: 7 residues within 4Å: Chain B: E.13, E.61, D.98, V.99, D.101, D.136 Ligands: CA.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.13, B:E.61, B:E.61, B:D.98, B:V.99 CA.7: 6 residues within 4Å: Chain B: N.100, E.102, D.134, D.136, D.185, Q.196 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.102, B:D.134, B:D.134, B:D.136, B:D.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, X. et al., Crystal structures of Drosophila N-cadherin ectodomain regions reveal a widely used class of Ca2+-free interdomain linkers. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2011-12-21

Peptides

Neural-cadherin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neural-cadherin

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