SMTL ID : 3ubl.1

Crystal structure of glutathione transferase (TARGET EFI-501770) from leptospira interrogans with gsh bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 10 residues within 4Å: Chain A: S.12, Y.14, P.36, K.50, I.51, P.52, E.63, S.64 Chain B: Y.102 Ligands: UNX.9 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.14 Hydrogen bonds: A:I.51, A:I.51, A:E.63, A:S.64, B:Y.102 Water bridges: A:Q.38, A:Q.38, A:I.51, A:E.63, A:G.65, A:G.65 Salt bridges: A:K.50, B:K.131 GSH.10: 11 residues within 4Å: Chain A: Y.102 Chain B: S.12, Y.14, P.36, Q.38, K.50, I.51, P.52, E.63, S.64 Ligands: UNX.14 15 PLIP interactions: 3 interactions with chain A, 12 interactions with chain B Water bridges: A:K.131, A:K.131, B:Y.14, B:I.51, B:G.65 Salt bridges: A:K.131, B:K.17, B:K.50 Hydrophobic interactions: B:Y.14 Hydrogen bonds: B:Q.38, B:G.49, B:I.51, B:I.51, B:E.63, B:S.64

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: K.195, A.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.196 Water bridges: A:G.197 Salt bridges: A:K.195 SO4.3: 2 residues within 4Å: Chain A: Q.77, T.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.78, A:T.78 SO4.4: 6 residues within 4Å: Chain A: L.182, N.183, G.184, W.185, K.186, E.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.184, A:W.185, A:K.186, A:E.187 Salt bridges: A:K.186 SO4.11: 6 residues within 4Å: Chain B: L.182, N.183, G.184, W.185, K.186, E.187 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.183, B:G.184, B:G.184, B:W.185, B:K.186, B:E.187

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: M.3, L.27, E.28, F.75 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.28 Water bridges: A:E.28 GOL.7: 3 residues within 4Å: Chain A: Q.31, L.200, D.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.204 Water bridges: A:R.33 GOL.8: 2 residues within 4Å: Chain A: S.143, P.144 No protein-ligand interaction detected (PLIP) GOL.12: 5 residues within 4Å: Chain B: E.24, T.78, Y.145, F.151, K.195 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.24, B:K.195, B:K.195 Water bridges: B:Y.145

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: A.9, S.10, Q.31, R.33, L.208 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: A.9, S.10, R.33, L.208 Ligand excluded by PLIP

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.9: 5 residues within 4Å: Chain A: S.12, N.13, Y.14, R.108 Ligands: GSH.1 No protein-ligand interaction detected (PLIP) UNX.14: 5 residues within 4Å: Chain B: S.12, N.13, Y.14, R.108 Ligands: GSH.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patskovsky, Y. et al., Crystal Structure of Glutathione S-Transferase from Leptospira Interrogans. To be Published

Release Date

2011-11-09

Peptides

Glutathione transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione transferase

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