SMTL ID : 3ubv.1

Oxygen-bound hell's gate globin I by classical hanging drop

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-trimer

Ligands

3 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)

HEM.1: 19 residues within 4Å: Chain A: L.41, F.42, Q.43, N.44, Q.49, K.52, L.53, V.56, L.77, R.80, H.81, Y.84, V.86, H.90, Y.91, V.94, Y.122, M.129 Ligands: OXY.2 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:L.41, A:F.42, A:F.42, A:L.53, A:V.56, A:V.56, A:L.77, A:Y.84, A:Y.84, A:V.86, A:V.86, A:H.90, A:Y.91, A:V.94, A:Y.122 Hydrogen bonds: A:L.41, A:Q.43, A:N.44, A:N.44 Water bridges: A:K.52 Salt bridges: A:K.52, A:R.80 Metal complexes: A:H.81 HEM.3: 18 residues within 4Å: Chain B: L.41, F.42, Q.43, N.44, Q.49, K.52, V.56, L.77, R.80, H.81, Y.84, V.86, H.90, Y.91, V.94, Y.122, M.129 Ligands: OXY.4 22 PLIP interactions: 22 interactions with chain B, Hydrophobic interactions: B:L.41, B:F.42, B:F.42, B:F.42, B:K.52, B:V.56, B:V.56, B:Y.84, B:Y.84, B:Y.84, B:V.86, B:H.90, B:Y.91, B:V.94, B:Y.122 Hydrogen bonds: B:L.41, B:Q.43, B:N.44, B:N.44, B:Y.84 Salt bridges: B:R.80 Metal complexes: B:H.81 HEM.5: 20 residues within 4Å: Chain C: L.41, F.42, Q.43, N.44, Q.49, K.52, L.53, V.56, L.77, R.80, H.81, Y.84, V.86, H.90, Y.91, V.94, Y.122, A.125, M.129 Ligands: OXY.6 22 PLIP interactions: 22 interactions with chain C, Hydrophobic interactions: C:L.41, C:F.42, C:F.42, C:V.56, C:V.56, C:L.77, C:Y.84, C:Y.84, C:Y.84, C:V.86, C:Y.91, C:Y.91, C:V.94, C:Y.122, C:A.125 Hydrogen bonds: C:L.41, C:Q.43, C:N.44, C:N.44, C:Y.84 Salt bridges: C:R.80 Metal complexes: C:H.81

3 x OXY: OXYGEN MOLECULE(Non-covalent)

OXY.2: 5 residues within 4Å: Chain A: Y.28, F.42, Q.49, L.53 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.49 OXY.4: 3 residues within 4Å: Chain B: Y.28, Q.49 Ligands: HEM.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.28, B:Y.28, B:Q.49 OXY.6: 4 residues within 4Å: Chain C: Y.28, F.42, Q.49 Ligands: HEM.5 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.28, C:Y.28, C:Q.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pechkova, E. et al., Oxygen-bound Hell's gate globin I by classical versus LB nanotemplate method. J.Cell.Biochem. (2012)

Release Date

2012-03-28

Peptides

Hemoglobin-like flavoprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
G

Hemoglobin-like flavoprotein

Related Entries With Identical Sequence