SMTL ID : 3uc5.1

Phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis complexed with ATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: P.7, G.8, S.9, F.10, G.16, H.17, I.20, K.87, G.88, L.89, R.90, E.98, T.118, Y.122, V.125, S.126, S.127, S.128 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:S.9, A:S.9, A:F.10, A:G.88, A:R.90, A:E.98, A:T.118, A:V.125, A:S.126, A:S.127, A:S.128, A:S.128 Water bridges: A:R.90, A:R.90, A:A.119, A:S.126, A:S.127, A:S.127 Salt bridges: A:H.17, A:H.17, A:R.90, A:R.90 ATP.2: 18 residues within 4Å: Chain B: P.7, G.8, S.9, F.10, G.16, H.17, I.20, K.87, G.88, L.89, R.90, E.98, T.118, Y.122, V.125, S.126, S.127, S.128 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:S.9, B:S.9, B:F.10, B:G.88, B:R.90, B:E.98, B:T.118, B:V.125, B:S.126, B:S.127, B:S.128, B:S.128 Water bridges: B:R.90, B:R.90, B:A.119, B:S.126, B:S.127, B:S.127 Salt bridges: B:H.17, B:H.17, B:R.90, B:R.90 ATP.3: 18 residues within 4Å: Chain C: P.7, G.8, S.9, F.10, G.16, H.17, I.20, K.87, G.88, L.89, R.90, E.98, T.118, Y.122, V.125, S.126, S.127, S.128 22 PLIP interactions: 22 interactions with chain C Hydrogen bonds: C:S.9, C:S.9, C:F.10, C:G.88, C:R.90, C:E.98, C:T.118, C:V.125, C:S.126, C:S.127, C:S.128, C:S.128 Water bridges: C:R.90, C:R.90, C:A.119, C:S.126, C:S.127, C:S.127 Salt bridges: C:H.17, C:H.17, C:R.90, C:R.90 ATP.4: 18 residues within 4Å: Chain D: P.7, G.8, S.9, F.10, G.16, H.17, I.20, K.87, G.88, L.89, R.90, E.98, T.118, Y.122, V.125, S.126, S.127, S.128 22 PLIP interactions: 22 interactions with chain D Hydrogen bonds: D:S.9, D:S.9, D:F.10, D:G.88, D:R.90, D:E.98, D:E.98, D:V.125, D:S.126, D:S.127, D:S.128, D:S.128 Water bridges: D:R.90, D:R.90, D:A.119, D:S.126, D:S.127, D:S.127 Salt bridges: D:H.17, D:H.17, D:R.90, D:R.90 ATP.5: 18 residues within 4Å: Chain E: P.7, G.8, S.9, F.10, G.16, H.17, I.20, K.87, G.88, L.89, R.90, E.98, T.118, Y.122, V.125, S.126, S.127, S.128 22 PLIP interactions: 22 interactions with chain E Hydrogen bonds: E:S.9, E:S.9, E:F.10, E:G.88, E:R.90, E:E.98, E:E.98, E:V.125, E:S.126, E:S.127, E:S.128, E:S.128 Water bridges: E:R.90, E:R.90, E:A.119, E:S.126, E:S.127, E:S.127 Salt bridges: E:H.17, E:H.17, E:R.90, E:R.90 ATP.6: 18 residues within 4Å: Chain F: P.7, G.8, S.9, F.10, G.16, H.17, I.20, K.87, G.88, L.89, R.90, E.98, T.118, Y.122, V.125, S.126, S.127, S.128 22 PLIP interactions: 22 interactions with chain F Hydrogen bonds: F:S.9, F:S.9, F:F.10, F:G.88, F:R.90, F:E.98, F:E.98, F:V.125, F:S.126, F:S.127, F:S.128, F:S.128 Water bridges: F:R.90, F:R.90, F:A.119, F:S.126, F:S.127, F:S.127 Salt bridges: F:H.17, F:H.17, F:R.90, F:R.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V. et al., X-ray study of the conformational changes in the molecule of phosphopantetheine adenylyltransferase from Mycobacterium tuberculosis during the catalyzed reaction. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-11-07

Peptides

Phosphopantetheine adenylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Phosphopantetheine adenylyltransferase

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