SMTL ID : 3uce.1 (4 other biounits)

Crystal structure of a small-chain dehydrogenase in complex with NADPH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 32 residues within 4Å: Chain A: G.13, T.15, S.16, G.17, I.18, G.19, S.37, R.38, Q.39, L.42, D.43, I.44, S.45, T.66, A.67, G.68, S.69, Y.86, T.90, K.91, T.115, S.116, G.117, M.118, P.158, G.159, L.160, T.161, T.163, E.164, A.165, Y.166 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.13, A:T.15, A:S.16, A:S.16, A:I.18, A:S.37, A:S.37, A:R.38, A:Q.39, A:Q.39, A:D.43, A:I.44, A:T.66, A:G.68, A:S.69, A:K.91, A:T.161, A:T.161, A:T.163, A:E.164, A:A.165 Water bridges: A:G.19, A:S.69, A:N.134 Salt bridges: A:R.38 NDP.2: 32 residues within 4Å: Chain B: G.13, T.15, S.16, G.17, I.18, G.19, S.37, R.38, Q.39, L.42, D.43, I.44, S.45, T.66, A.67, G.68, S.69, Y.86, T.90, K.91, T.115, S.116, G.117, M.118, P.158, G.159, L.160, T.161, T.163, E.164, A.165, Y.166 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:P.158 Hydrogen bonds: B:T.15, B:T.15, B:T.15, B:S.16, B:I.18, B:S.37, B:S.37, B:R.38, B:Q.39, B:Q.39, B:D.43, B:I.44, B:T.66, B:G.68, B:S.69, B:K.91, B:T.161, B:T.161, B:T.163, B:E.164, B:A.165, B:Y.166 Water bridges: B:G.19, B:S.69, B:S.69, B:N.134 Salt bridges: B:R.38 NDP.3: 32 residues within 4Å: Chain C: G.13, T.15, S.16, G.17, I.18, G.19, S.37, R.38, Q.39, L.42, D.43, I.44, S.45, T.66, A.67, G.68, S.69, Y.86, T.90, K.91, T.115, S.116, G.117, M.118, P.158, G.159, L.160, T.161, T.163, E.164, A.165, Y.166 27 PLIP interactions: 27 interactions with chain C Hydrogen bonds: C:G.13, C:T.15, C:T.15, C:S.16, C:S.16, C:I.18, C:S.37, C:S.37, C:R.38, C:Q.39, C:Q.39, C:D.43, C:D.43, C:I.44, C:T.66, C:G.68, C:G.68, C:S.69, C:K.91, C:T.161, C:T.161, C:T.163, C:E.164, C:A.165 Water bridges: C:G.19, C:Y.86 Salt bridges: C:R.38 NDP.4: 31 residues within 4Å: Chain D: G.13, T.15, S.16, G.17, I.18, G.19, S.37, R.38, Q.39, L.42, D.43, I.44, S.45, T.66, A.67, G.68, S.69, T.90, K.91, T.115, S.116, G.117, M.118, P.158, G.159, L.160, T.161, T.163, E.164, A.165, Y.166 29 PLIP interactions: 29 interactions with chain D Hydrogen bonds: D:G.13, D:T.15, D:T.15, D:S.16, D:S.16, D:I.18, D:S.37, D:S.37, D:R.38, D:Q.39, D:Q.39, D:D.43, D:D.43, D:I.44, D:T.66, D:G.68, D:G.68, D:S.69, D:K.91, D:T.161, D:T.161, D:T.163, D:E.164, D:A.165 Water bridges: D:G.19, D:S.69, D:E.164, D:A.165 Salt bridges: D:R.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buysschaert, G. et al., Structural and biochemical characterization of an atypical short-chain dehydrogenase/reductase reveals an unusual cofactor preference. Febs J. (2013)

Release Date

2012-11-28

Peptides

Dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Dehydrogenase

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