SMTL ID : 3ucx.1

The structure of a Short chain dehydrogenase from Mycobacterium smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: G.20, P.21, A.22, L.23, G.24, N.95 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: G.20, P.21, A.22, L.23, G.24, N.95 Ligand excluded by PLIP CL.7: 6 residues within 4Å: Chain C: G.20, P.21, A.22, L.23, G.24, N.95 Ligand excluded by PLIP CL.10: 6 residues within 4Å: Chain D: G.20, P.21, A.22, L.23, G.24, N.95 Ligand excluded by PLIP

4 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 7 residues within 4Å: Chain A: W.194, G.195, G.196, K.199, V.213, E.214, Y.217 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.194 1PE.5: 7 residues within 4Å: Chain B: W.194, G.195, G.196, K.199, V.213, E.214, Y.217 1 PLIP interactions: 1 interactions with chain B Water bridges: B:W.194 1PE.8: 7 residues within 4Å: Chain C: W.194, G.195, G.196, K.199, V.213, E.214, Y.217 1 PLIP interactions: 1 interactions with chain C Water bridges: C:W.194 1PE.11: 7 residues within 4Å: Chain D: W.194, G.195, G.196, K.199, V.213, E.214, Y.217 1 PLIP interactions: 1 interactions with chain D Water bridges: D:W.194

4 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.3: 6 residues within 4Å: Chain A: P.104, A.155, K.156 Chain C: T.176, E.177, E.180 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Water bridges: A:A.155, D:K.227 PG0.6: 6 residues within 4Å: Chain B: P.104, A.155, K.156 Chain D: T.176, E.177, E.180 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Water bridges: C:K.227, B:A.155 PG0.9: 6 residues within 4Å: Chain A: T.176, E.177, E.180 Chain C: P.104, A.155, K.156 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Water bridges: C:A.155, B:K.227 PG0.12: 6 residues within 4Å: Chain B: T.176, E.177, E.180 Chain D: P.104, A.155, K.156 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Water bridges: A:K.227, D:A.155

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)

Release Date

2011-11-09

Peptides

Short chain dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Short chain dehydrogenase