SMTL ID : 3udo.1

Crystal structure of putative isopropylamlate dehydrogenase from Campylobacter jejuni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: L.261, I.287, A.293, N.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.294 EDO.2: 7 residues within 4Å: Chain A: P.112, C.113, K.114, Y.116, N.258, L.263, L.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.112, A:K.114, A:N.258 Water bridges: A:N.258, A:S.260 EDO.7: 4 residues within 4Å: Chain B: L.261, I.287, A.293, N.294 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.294 EDO.8: 7 residues within 4Å: Chain B: P.112, C.113, K.114, Y.116, N.258, L.263, L.264 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.112, B:K.114, B:N.258 Water bridges: B:N.258, B:S.260

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.101, R.140, D.248 Ligands: SO4.6 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.140 Salt bridges: A:R.101, A:R.140 SO4.4: 4 residues within 4Å: Chain A: R.111, D.252, A.280 Chain B: M.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.252 Salt bridges: A:R.111 SO4.5: 2 residues within 4Å: Chain A: I.88, R.91 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.91 SO4.6: 8 residues within 4Å: Chain A: R.101, N.109, R.111, R.140, S.266, E.278, A.280 Ligands: SO4.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.109, A:R.140, A:S.266 Water bridges: A:R.101, A:R.111, A:R.111 Salt bridges: A:R.101, A:R.111 SO4.9: 4 residues within 4Å: Chain B: R.101, R.140, D.248 Ligands: SO4.12 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.140 Salt bridges: B:R.101, B:R.140 SO4.10: 4 residues within 4Å: Chain A: M.228 Chain B: R.111, D.252, A.280 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.252 Salt bridges: B:R.111 SO4.11: 2 residues within 4Å: Chain B: I.88, R.91 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.91 SO4.12: 8 residues within 4Å: Chain B: R.101, N.109, R.111, R.140, S.266, E.278, A.280 Ligands: SO4.9 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.109, B:R.140, B:S.266 Water bridges: B:R.101, B:R.111, B:R.111 Salt bridges: B:R.101, B:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tkaczuk, K.L. et al., Crystal structure of putative isopropylamlate dehydrogenase from Campylobacter jejuni. To be Published

Release Date

2011-11-09

Peptides

3-isopropylmalate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3-isopropylmalate dehydrogenase

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