SMTL ID : 3uen.1

Crystal structure of TopBP1 BRCT4/5 domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 5 residues within 4Å: Chain A: P.54, L.55, T.69, N.70, T.71 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.70, A:T.71, A:T.71

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: L.16, V.17, L.18, E.25, I.39, M.40, S.41 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.15, A:V.17, A:E.25 Water bridges: A:S.41, A:L.42 GOL.3: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:V.96 GOL.4: 3 residues within 4Å: Chain A: C.58, E.59, V.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.60 Water bridges: A:C.58, A:C.58 GOL.5: 6 residues within 4Å: Chain A: N.24, N.27, I.28, I.31, N.70, V.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.24, A:N.27, A:N.70 GOL.6: 2 residues within 4Å: Chain A: N.22, S.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.26, A:S.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leung, C.C. et al., Structural insights into recognition of MDC1 by TopBP1 in DNA replication checkpoint control. Structure (2013)

Release Date

2013-07-03

Peptides

DNA topoisomerase 2-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA topoisomerase 2-binding protein 1

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