SMTL ID : 3uer.1

Crystal structure of amylosucrase from Deinococcus geothermalis in complex with turanose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x Z9N- GLC: alpha-D-glucopyranose-(1-3)-alpha-D-fructofuranose(Non-covalent)

Z9N-GLC.1: 17 residues within 4Å: Chain A: D.142, Y.145, H.185, I.226, F.227, F.253, Q.257, R.287, D.289, A.290, F.293, E.331, H.400, D.401, R.525 Ligands: FRU-GLC.2, FRU-GLC.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.142, A:H.185, A:Q.257, A:R.287, A:E.331, A:E.331, A:H.400, A:R.525, A:R.525, A:R.287, A:A.290, A:E.331 Water bridges: A:R.529 Z9N-GLC.3: 17 residues within 4Å: Chain B: D.142, Y.145, H.185, I.226, F.227, F.253, Q.257, R.287, D.289, A.290, F.293, E.331, H.400, D.401, R.525 Ligands: FRU-GLC.4, FRU-GLC.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.142, B:D.142, B:H.185, B:Q.257, B:R.287, B:E.331, B:H.400, B:R.525, B:R.525, B:R.287, B:A.290, B:E.331, B:D.401 Water bridges: B:R.529, B:R.529

2 x FRU- GLC: alpha-D-glucopyranose-(1-3)-beta-D-fructofuranose(Non-covalent)

FRU-GLC.2: 18 residues within 4Å: Chain A: D.142, Y.145, H.185, I.226, F.227, F.253, Q.257, R.287, D.289, A.290, F.293, E.331, I.333, H.400, D.401, R.525 Ligands: Z9N-GLC.1, Z9N-GLC.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.142, A:H.185, A:Q.257, A:R.287, A:E.331, A:E.331, A:H.400, A:R.525, A:R.525, A:A.290, A:E.331, A:D.401 Water bridges: A:R.529, A:I.333 FRU-GLC.4: 18 residues within 4Å: Chain B: D.142, Y.145, H.185, I.226, F.227, F.253, Q.257, R.287, D.289, A.290, F.293, E.331, I.333, H.400, D.401, R.525 Ligands: Z9N-GLC.3, Z9N-GLC.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.142, B:D.142, B:H.185, B:Q.257, B:R.287, B:E.331, B:H.400, B:R.525, B:R.525, B:A.290, B:E.331, B:D.401 Water bridges: B:R.529, B:R.529, B:I.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guerin, F. et al., Structural Investigation of the Thermostability and Product Specificity of Amylosucrase from the Bacterium Deinococcus geothermalis. J.Biol.Chem. (2012)

Release Date

2012-01-11

Peptides

Amylosucrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Amylosucrase

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