- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-hexamer
- Ligands
- 11 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 31 x AHR: alpha-L-arabinofuranose(Non-covalent)
AHR.3: 13 residues within 4Å:- Chain A: E.46, G.90, N.91, W.116, N.191, E.192, Y.257, E.301, W.305, Q.346, L.351
- Ligands: TRS.2, AHR.4
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:E.46, A:N.91, A:N.191, A:N.191, A:Y.257, A:Q.346
AHR.4: 9 residues within 4Å:- Chain A: E.192, Y.194, W.197, Y.257, W.305, F.398
- Ligands: TRS.2, AHR.3, AHR.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.194, A:Y.194
- Water bridges: A:H.255
AHR.5: 8 residues within 4Å:- Chain A: F.256, Y.257, R.276, M.397, F.398, N.400, M.402
- Ligands: AHR.4
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.257, A:R.276, A:R.276, A:N.400
AHR.6: 7 residues within 4Å:- Chain A: R.79, E.371, N.375, H.376, Y.455, I.476
- Ligands: AHR.7
3 PLIP interactions:3 interactions with chain A- Water bridges: A:E.371, A:E.371
- Salt bridges: A:H.376
AHR.7: 3 residues within 4Å:- Chain A: H.376, Y.455
- Ligands: AHR.6
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:H.376
AHR.8: 5 residues within 4Å:- Chain A: P.35, I.36, S.37, R.38, E.420
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.38
- Water bridges: A:S.37, A:S.37
AHR.9: 5 residues within 4Å:- Chain A: K.281, K.282, I.338
- Chain D: E.275, I.278
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.281
- Water bridges: A:D.337
AHR.12: 13 residues within 4Å:- Chain B: E.46, G.90, N.91, W.116, N.191, E.192, Y.257, E.301, W.305, Q.346, L.351
- Ligands: TRS.11, AHR.13
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:E.46, B:N.91, B:N.191, B:N.191, B:Y.257, B:Q.346
AHR.13: 9 residues within 4Å:- Chain B: E.192, Y.194, W.197, Y.257, W.305, F.398
- Ligands: TRS.11, AHR.12, AHR.14
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.194
- Water bridges: B:H.255, B:N.400, B:N.400
AHR.14: 9 residues within 4Å:- Chain B: D.233, F.256, Y.257, R.276, M.397, F.398, N.400, M.402
- Ligands: AHR.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Y.257, B:R.276, B:R.276
AHR.15: 6 residues within 4Å:- Chain B: R.79, E.371, N.375, H.376, Y.455
- Ligands: AHR.16
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.371
- Salt bridges: B:H.376
AHR.16: 3 residues within 4Å:- Chain B: H.376, Y.455
- Ligands: AHR.15
1 PLIP interactions:1 interactions with chain B- Salt bridges: B:H.376
AHR.18: 13 residues within 4Å:- Chain C: F.44, E.46, G.90, N.91, W.116, N.191, E.192, Y.257, E.301, W.305, Q.346, L.351
- Ligands: AHR.19
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:E.46, C:N.91, C:N.191, C:N.191, C:Y.257, C:Q.346
- Water bridges: C:N.91, C:N.91
AHR.19: 8 residues within 4Å:- Chain C: E.192, Y.194, W.197, Y.257, W.305, F.398
- Ligands: AHR.18, AHR.20
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:Y.194, C:Y.194
- Water bridges: C:W.197, C:D.233, C:H.255
AHR.20: 8 residues within 4Å:- Chain C: F.256, Y.257, R.276, M.397, F.398, N.400, M.402
- Ligands: AHR.19
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:Y.257, C:R.276, C:R.276, C:N.400
AHR.21: 7 residues within 4Å:- Chain C: R.79, E.371, N.375, H.376, Y.455, I.476
- Ligands: AHR.22
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:E.371, C:E.371
- Water bridges: C:R.79, C:K.81, C:K.368, C:N.375
- Salt bridges: C:H.376
AHR.22: 4 residues within 4Å:- Chain C: H.376, Y.455, E.500
- Ligands: AHR.21
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.500
- Salt bridges: C:H.376
AHR.23: 4 residues within 4Å:- Chain A: E.275
- Chain D: K.281, K.282, I.338
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain A- Salt bridges: D:K.281, D:K.282
- Hydrogen bonds: A:E.275
AHR.26: 13 residues within 4Å:- Chain D: E.46, G.90, N.91, W.116, N.191, E.192, Y.257, E.301, W.305, Q.346, L.351
- Ligands: TRS.25, AHR.27
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:E.46, D:N.91, D:N.191, D:N.191, D:Q.346
AHR.27: 9 residues within 4Å:- Chain D: E.192, Y.194, W.197, Y.257, W.305, F.398
- Ligands: TRS.25, AHR.26, AHR.28
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Y.194
- Water bridges: D:H.255
AHR.28: 8 residues within 4Å:- Chain D: F.256, Y.257, R.276, M.397, F.398, N.400, M.402
- Ligands: AHR.27
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:Y.257, D:R.276, D:R.276, D:N.400
AHR.29: 6 residues within 4Å:- Chain D: R.79, E.371, N.375, H.376, I.476
- Ligands: AHR.30
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:E.371
- Water bridges: D:R.79, D:N.375, D:N.375
- Salt bridges: D:H.376
AHR.30: 3 residues within 4Å:- Chain D: H.376, Y.455
- Ligands: AHR.29
1 PLIP interactions:1 interactions with chain D- Salt bridges: D:H.376
AHR.33: 14 residues within 4Å:- Chain E: E.46, L.48, G.90, N.91, W.116, N.191, E.192, Y.257, E.301, W.305, Q.346, L.351
- Ligands: TRS.32, AHR.34
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:E.46, E:N.91, E:N.191, E:N.191, E:Y.257, E:Q.346
AHR.34: 10 residues within 4Å:- Chain E: E.192, Y.194, W.197, H.255, Y.257, W.305, F.398
- Ligands: TRS.32, AHR.33, AHR.35
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Y.194, E:Y.194
- Water bridges: E:H.255, E:N.400
AHR.35: 8 residues within 4Å:- Chain E: F.256, Y.257, R.276, M.397, F.398, N.400, M.402
- Ligands: AHR.34
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Y.257, E:R.276, E:R.276, E:N.400
AHR.38: 13 residues within 4Å:- Chain F: E.46, G.90, N.91, W.116, N.191, E.192, Y.257, E.301, W.305, Q.346, L.351
- Ligands: TRS.37, AHR.39
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:E.46, F:N.91, F:N.191, F:N.191, F:Y.257, F:Q.346
AHR.39: 8 residues within 4Å:- Chain F: E.192, Y.194, W.197, Y.257, F.398
- Ligands: TRS.37, AHR.38, AHR.40
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Y.194
- Water bridges: F:H.255, F:N.400, F:N.400
AHR.40: 8 residues within 4Å:- Chain F: F.256, Y.257, R.276, M.397, F.398, N.400, M.402
- Ligands: AHR.39
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:Y.257, F:R.276, F:R.276, F:N.400
AHR.41: 7 residues within 4Å:- Chain F: R.79, E.371, N.375, H.376, Y.455, I.476
- Ligands: AHR.42
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:E.371
- Salt bridges: F:K.81, F:H.376
AHR.42: 4 residues within 4Å:- Chain F: H.376, Y.455, E.500
- Ligands: AHR.41
2 PLIP interactions:2 interactions with chain F- Water bridges: F:Y.455
- Salt bridges: F:H.376
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Im, D.-H. et al., Crystal Structures of Glycoside Hydrolase Family 51 alpha-L-Arabinofuranosidase from Thermotoga maritima. Biosci.Biotechnol.Biochem. (2012)
- Release Date
- 2012-03-07
- Peptides
- Alpha-L-arabinofuranosidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-hexamer
- Ligands
- 11 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 31 x AHR: alpha-L-arabinofuranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Im, D.-H. et al., Crystal Structures of Glycoside Hydrolase Family 51 alpha-L-Arabinofuranosidase from Thermotoga maritima. Biosci.Biotechnol.Biochem. (2012)
- Release Date
- 2012-03-07
- Peptides
- Alpha-L-arabinofuranosidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F