- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 15 x XYP: beta-D-xylopyranose(Non-covalent)
XYP.3: 6 residues within 4Å:- Chain A: N.91, E.192, W.197, Y.257, F.398
- Ligands: TRS.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.91, A:E.192, A:W.197
- Water bridges: A:N.91
XYP.4: 5 residues within 4Å:- Chain A: L.48, G.49, Q.118, E.119, E.120
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.49, A:Q.118, A:E.119
- Water bridges: A:H.47, A:E.119
XYP.5: 6 residues within 4Å:- Chain A: L.272, E.275, R.276, F.404, S.405
- Chain D: R.291
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:R.276, A:S.405, D:K.282, D:K.282
- Water bridges: A:E.275
- Salt bridges: D:R.291
XYP.8: 6 residues within 4Å:- Chain B: N.91, E.192, W.197, Y.257, F.398
- Ligands: TRS.7
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.91, B:E.192
- Water bridges: B:N.191
XYP.9: 4 residues within 4Å:- Chain B: G.49, R.50, Q.118, E.119
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.49, B:E.119, B:E.119
- Water bridges: B:H.47, B:L.48, B:G.49, B:E.119
XYP.10: 5 residues within 4Å:- Chain B: L.272, R.276, F.404, S.405
- Chain E: R.291
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain E- Hydrogen bonds: B:R.276, B:S.405, B:S.405
- Water bridges: E:K.282
- Salt bridges: E:K.282
XYP.13: 6 residues within 4Å:- Chain C: N.91, E.192, W.197, Y.257, F.398
- Ligands: TRS.12
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.91, C:E.192
- Water bridges: C:N.91
XYP.14: 5 residues within 4Å:- Chain C: V.33, K.334, V.382, K.383, T.384
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:T.384
XYP.17: 6 residues within 4Å:- Chain D: N.91, E.192, W.197, Y.257, F.398
- Ligands: TRS.16
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.91, D:E.192
- Water bridges: D:N.91
XYP.18: 6 residues within 4Å:- Chain D: G.49, Y.53, Q.118, E.119, E.120, K.312
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:G.49, D:K.312
- Water bridges: D:G.49, D:G.49, D:G.49, D:C.51, D:E.119, D:E.120
- Salt bridges: D:K.312
XYP.19: 6 residues within 4Å:- Chain A: D.285, R.291
- Chain D: L.272, R.276, F.404, S.405
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:K.282, A:K.282, D:R.276, D:S.405
- Water bridges: A:R.291, D:E.275
- Salt bridges: A:R.291
XYP.20: 6 residues within 4Å:- Chain D: E.58, E.59, G.60, S.61, P.62, K.358
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:E.58, D:E.59, D:S.61
- Salt bridges: D:K.358
XYP.23: 6 residues within 4Å:- Chain E: N.91, E.192, W.197, Y.257, F.398
- Ligands: TRS.22
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:N.91, E:N.91, E:E.192
- Water bridges: E:N.91
XYP.24: 5 residues within 4Å:- Chain E: G.49, R.50, Q.118, E.119, K.312
9 PLIP interactions:9 interactions with chain E- Hydrogen bonds: E:G.49, E:E.119, E:E.119, E:E.119
- Water bridges: E:H.47, E:H.47, E:L.48, E:G.49, E:G.49
XYP.27: 6 residues within 4Å:- Chain F: N.91, E.192, W.197, Y.257, F.398
- Ligands: TRS.26
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:N.91, F:E.192
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Im, D.-H. et al., Crystal Structures of Glycoside Hydrolase Family 51 alpha-L-Arabinofuranosidase from Thermotoga maritima. Biosci.Biotechnol.Biochem. (2012)
- Release Date
- 2012-03-07
- Peptides
- Alpha-L-arabinofuranosidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 15 x XYP: beta-D-xylopyranose(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Im, D.-H. et al., Crystal Structures of Glycoside Hydrolase Family 51 alpha-L-Arabinofuranosidase from Thermotoga maritima. Biosci.Biotechnol.Biochem. (2012)
- Release Date
- 2012-03-07
- Peptides
- Alpha-L-arabinofuranosidase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F