SMTL ID : 3ug6.1

Crystal Structure of Get3 from Methanocaldococcus jannaschii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-tetramer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Covalent)

ADP.1: 20 residues within 4Å: Chain A: G.36, V.37, G.38, K.39, T.40, T.41, D.63, N.274, Q.275, P.313, L.314, L.315, T.317, E.318, A.319 Chain B: K.34, E.247, M.249, R.289 Ligands: MG.2 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.36, A:V.37, A:G.38, A:K.39, A:T.40, A:T.41, A:T.41, A:N.274, A:Q.275, A:P.313, A:L.315, A:A.319, A:A.319 Salt bridges: A:K.39, B:K.34, B:K.34 ADP.4: 20 residues within 4Å: Chain A: K.34, E.247, M.249, R.289 Chain B: G.36, V.37, G.38, K.39, T.40, T.41, D.63, N.274, Q.275, P.313, L.314, L.315, T.317, E.318, A.319 Ligands: MG.5 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.36, B:V.37, B:G.38, B:K.39, B:T.40, B:T.41, B:T.41, B:N.274, B:Q.275, B:P.313, B:L.315, B:A.319, B:A.319 Salt bridges: B:K.39, A:K.34, A:K.34 ADP.6: 20 residues within 4Å: Chain C: G.36, V.37, G.38, K.39, T.40, T.41, D.63, S.67, N.274, Q.275, P.313, L.314, L.315, E.318, A.319 Chain D: K.34, E.247, M.249, R.289 Ligands: MG.7 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:G.36, C:V.37, C:G.38, C:K.39, C:T.40, C:T.41, C:T.41, C:S.67, C:N.274, C:Q.275, C:P.313, C:L.315, C:E.318, C:A.319, C:A.319 Salt bridges: C:K.39, D:K.34, D:K.34 ADP.9: 20 residues within 4Å: Chain C: K.34, E.247, M.249, R.289 Chain D: G.35, G.36, V.37, G.38, K.39, T.40, T.41, D.63, N.274, Q.275, P.313, L.314, L.315, E.318, A.319 Ligands: MG.10 19 PLIP interactions: 16 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:G.36, D:V.37, D:G.38, D:K.39, D:T.40, D:T.40, D:T.41, D:T.41, D:N.274, D:Q.275, D:P.313, D:L.315, D:E.318, D:A.319, D:A.319, C:E.247 Salt bridges: D:K.39, C:K.34, C:K.34

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.40, D.63, D.158 Ligands: ADP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.40, A:D.63 MG.5: 4 residues within 4Å: Chain B: T.40, D.63, S.67 Ligands: ADP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.40, B:D.63 MG.7: 4 residues within 4Å: Chain C: T.40, D.63, D.158 Ligands: ADP.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.40, C:D.63 MG.10: 4 residues within 4Å: Chain D: T.40, D.63, S.67 Ligands: ADP.9 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:T.40, D:D.63

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.283, C.286 Chain B: C.283, C.286 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.283, B:C.286, A:C.283, A:C.286 ZN.8: 4 residues within 4Å: Chain C: C.283, C.286 Chain D: C.283, C.286 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Metal complexes: C:C.283, C:C.286, D:C.283, D:C.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suloway, C.J. et al., Tail-anchor targeting by a Get3 tetramer: the structure of an archaeal homologue. Embo J. (2012)

Release Date

2011-12-07

Peptides

arsenical pump-driving ATPase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

arsenical pump-driving ATPase

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