SMTL ID : 3ugj.1

Formyl Glycinamide ribonucletide amidotransferase from Salmonella Typhimurum: Role of the ATP complexation and glutaminase domain in catalytic coupling

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.267, K.300, E.302, D.326, K.784 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.300, A:K.784 SO4.2: 6 residues within 4Å: Chain A: H.224, T.303, H.304, N.305, H.306, S.786 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.305, A:H.306, A:S.786, A:S.786 Water bridges: A:T.303 Salt bridges: A:H.224 SO4.3: 6 residues within 4Å: Chain A: K.335, R.487, N.1059, S.1060, H.1061, V.1062 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.1059, A:H.1061, A:V.1062 Water bridges: A:K.335, A:R.487, A:R.487, A:D.494, A:E.1063 Salt bridges: A:K.335, A:R.487, A:H.1061 SO4.4: 3 residues within 4Å: Chain A: W.313, R.1167, R.1172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.1172 Water bridges: A:L.379 Salt bridges: A:R.1167 SO4.5: 5 residues within 4Å: Chain A: H.224, E.302, G.512, A.513, K.784 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.513 Water bridges: A:E.302, A:H.304, A:D.510, A:K.784 Salt bridges: A:H.224, A:K.784

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.6: 18 residues within 4Å: Chain A: V.341, F.343, T.394, G.395, Y.396, F.397, K.657, L.660, Q.676, P.684, A.686, D.687, E.726, N.730, S.894 Ligands: MG.7, MG.8, MG.9 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:T.394, A:G.395, A:Y.396, A:Y.396, A:Q.676, A:A.686, A:N.730, A:N.730, A:S.894, A:S.894 Water bridges: A:K.657, A:K.657, A:K.657, A:D.895, A:D.895, A:D.895 Salt bridges: A:K.657

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.7: 4 residues within 4Å: Chain A: D.687, N.730, D.892 Ligands: ADP.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.687, A:D.892 MG.8: 2 residues within 4Å: Chain A: E.726 Ligands: ADP.6 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.726, H2O.1, H2O.1 MG.9: 1 residues within 4Å: Ligands: ADP.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanwar, A.S. et al., Formylglycinamide ribonucleotide amidotransferase from Salmonella typhimurium: role of ATP complexation and the glutaminase domain in catalytic coupling. Acta Crystallogr.,Sect.D (2012)

Release Date

2012-06-06

Peptides

Phosphoribosylformylglycinamidine synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoribosylformylglycinamidine synthase

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