SMTL ID : 3ugv.1

Crystal structure of an enolase from alpha pretobacterium bal199 (EFI TARGET EFI-501650) with bound MG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-octamer

Ligands

16 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: K.194, D.225, E.251, E.277 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.225, A:E.277, H2O.1, H2O.2, H2O.3 MG.2: 2 residues within 4Å: Chain A: R.266, L.269 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:R.266, A:L.269, H2O.1, H2O.1, H2O.1, H2O.11 MG.5: 3 residues within 4Å: Chain B: D.225, E.251, E.277 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.225, B:E.251, B:E.277, H2O.6, H2O.6, H2O.8 MG.6: 2 residues within 4Å: Chain B: R.266, L.269 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:R.266, B:L.269, H2O.1, H2O.5, H2O.5, H2O.5 MG.8: 3 residues within 4Å: Chain C: D.225, E.251, E.277 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.225, C:E.251, C:E.277, H2O.10, H2O.10 MG.9: 2 residues within 4Å: Chain C: R.266, L.269 6 PLIP interactions: 2 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:R.266, C:L.269, H2O.5, H2O.5, H2O.8, H2O.8 MG.10: 4 residues within 4Å: Chain D: K.194, D.225, E.251, E.277 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.225, D:E.251, D:E.277, H2O.11, H2O.12, H2O.12 MG.11: 2 residues within 4Å: Chain D: R.266, L.269 6 PLIP interactions: 2 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:R.266, D:L.269, H2O.8, H2O.8, H2O.11, H2O.11 MG.13: 4 residues within 4Å: Chain E: K.194, D.225, E.251, E.277 5 PLIP interactions: 2 interactions with chain E, 3 Ligand-Water interactions Metal complexes: E:D.225, E:E.251, H2O.17, H2O.18, H2O.19 MG.14: 2 residues within 4Å: Chain E: R.266, L.269 6 PLIP interactions: 2 interactions with chain E, 4 Ligand-Water interactions Metal complexes: E:R.266, E:L.269, H2O.16, H2O.16, H2O.29, H2O.31 MG.15: 4 residues within 4Å: Chain F: K.194, D.225, E.251, E.277 5 PLIP interactions: 2 interactions with chain F, 3 Ligand-Water interactions Metal complexes: F:E.251, F:E.277, H2O.20, H2O.21, H2O.21 MG.16: 2 residues within 4Å: Chain F: R.266, L.269 6 PLIP interactions: 2 interactions with chain F, 4 Ligand-Water interactions Metal complexes: F:R.266, F:L.269, H2O.16, H2O.19, H2O.19, H2O.19 MG.18: 5 residues within 4Å: Chain G: K.194, D.225, N.227, E.251, E.277 6 PLIP interactions: 3 interactions with chain G, 3 Ligand-Water interactions Metal complexes: G:D.225, G:E.251, G:E.277, H2O.25, H2O.26, H2O.26 MG.19: 3 residues within 4Å: Chain G: R.266, L.269, D.295 6 PLIP interactions: 2 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:R.266, G:L.269, H2O.19, H2O.24, H2O.24, H2O.24 MG.20: 4 residues within 4Å: Chain H: K.194, D.225, E.251, E.277 5 PLIP interactions: 2 interactions with chain H, 3 Ligand-Water interactions Metal complexes: H:E.251, H:E.277, H2O.30, H2O.31, H2O.34 MG.21: 2 residues within 4Å: Chain H: R.266, L.269 6 PLIP interactions: 2 interactions with chain H, 4 Ligand-Water interactions Metal complexes: H:R.266, H:L.269, H2O.24, H2O.29, H2O.29, H2O.30

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: H.286, V.316, W.320 Chain G: H.286, W.320 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: H.286, W.320 Chain F: H.286, W.320 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain D: H.286, W.320 Chain H: H.286, W.320 Ligand excluded by PLIP

2 x NI: NICKEL (II) ION(Non-covalent)

NI.4: 4 residues within 4Å: Chain A: H.267 Chain B: H.267 Chain C: H.267 Chain D: H.267 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D, 1 interactions with chain C, 1 interactions with chain B Metal complexes: A:H.267, D:H.267, C:H.267, B:H.267 NI.17: 4 residues within 4Å: Chain E: H.267 Chain F: H.267 Chain G: H.267 Chain H: H.267 4 PLIP interactions: 1 interactions with chain G, 1 interactions with chain F, 1 interactions with chain H, 1 interactions with chain E Metal complexes: G:H.267, F:H.267, H:H.267, E:H.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Crystal structure of an enolase from alpha pretobacterium bal199 (EFI TARGET EFI-501650) with bound MG. to be published

Release Date

2011-11-23

Peptides

Enolase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Enolase