SMTL ID : 3ugx.1 (3 other biounits)

Crystal Structure of Visual Arrestin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

8 x PTD: PENTANEDIAL(Non-covalent)

PTD.1: 5 residues within 4Å: Chain A: D.29, L.61, K.65, H.165, K.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.65 PTD.2: 3 residues within 4Å: Chain A: Y.68, Q.97, F.162 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.162 PTD.3: 5 residues within 4Å: Chain A: V.258, Y.260, S.261, S.262 Ligands: PTD.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.262 PTD.4: 6 residues within 4Å: Chain A: T.268, V.269, A.270, A.271, N.296, N.297 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.296 Hydrogen bonds: A:A.271, A:N.296 PTD.5: 4 residues within 4Å: Chain A: K.24, Y.35, L.121, F.387 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.387 Hydrogen bonds: A:K.24, A:Y.35 PTD.6: 10 residues within 4Å: Chain A: P.137, C.138, V.140, Q.188, S.318, S.319, T.320, I.321, M.331, I.333 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.140, A:Q.188 Hydrogen bonds: A:C.138, A:I.321 PTD.7: 3 residues within 4Å: Chain A: Y.135, I.326 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.135 PTD.8: 3 residues within 4Å: Chain A: K.328, L.334 Ligands: PTD.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.328

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 4 residues within 4Å: Chain A: S.209, T.240, E.241, K.242 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.241, A:E.241, A:E.241, A:K.242 Water bridges: A:D.210

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.10: 3 residues within 4Å: Chain A: Y.94, F.95 Ligands: PTD.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.95 EDO.11: 1 residues within 4Å: Chain A: K.277 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Granzin, J. et al., Crystal Structure of p44, a Constitutively Active Splice Variant of Visual Arrestin. J.Mol.Biol. (2012)

Release Date

2012-02-08

Peptides

S-arrestin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

S-arrestin

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