SMTL ID : 3uiw.3 (2 other biounits)

Zebrafish Grx2 (APO)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

4 x GSH: GLUTATHIONE(Non-covalent)

GSH.1: 11 residues within 4Å: Chain A: K.54, C.57, P.58, Y.59, Q.89, T.100, V.101, P.102, G.113, G.114, S.115 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.59 Hydrogen bonds: A:Q.89, A:V.101, A:V.101, A:V.101, A:G.114, A:S.115 Water bridges: A:S.115, A:S.115, A:D.116, A:D.116 Salt bridges: A:K.54 GSH.3: 11 residues within 4Å: Chain B: K.54, C.57, P.58, Y.59, Q.89, T.100, V.101, G.113, G.114, S.115, D.116 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:Y.59 Hydrogen bonds: B:Q.89, B:V.101, B:V.101, B:G.114, B:S.115, B:D.116, B:D.116 Salt bridges: B:K.54 GSH.4: 11 residues within 4Å: Chain C: K.54, C.57, P.58, Y.59, Q.89, T.100, V.101, P.102, G.113, G.114, S.115 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:Y.59 Hydrogen bonds: C:Q.89, C:V.101, C:V.101, C:V.101, C:G.114, C:S.115 Water bridges: C:Y.59, C:S.115, C:D.116, C:D.116 Salt bridges: C:K.54 GSH.6: 11 residues within 4Å: Chain D: K.54, C.57, P.58, Y.59, Q.89, T.100, V.101, G.113, G.114, S.115, D.116 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:Y.59 Hydrogen bonds: D:Q.89, D:V.101, D:V.101, D:G.114, D:S.115, D:D.116 Salt bridges: D:K.54

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.46, N.47, C.48 Chain C: C.136, C.137 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:C.137, A:S.46, A:C.48 Water bridges: C:C.136, A:V.49 SO4.5: 5 residues within 4Å: Chain A: C.136, C.137 Chain C: S.46, N.47, C.48 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain C Hydrogen bonds: A:C.137, C:S.46, C:C.48 Water bridges: A:C.136, C:V.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brautigam, L. et al., A New Mode of Iron-sulfur Cluster Coordination in Glutaredoxins is Crucial for Axonogenesis. To be Published

Release Date

2013-03-27

Peptides

Glutaredoxin 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glutaredoxin 2

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