SMTL ID : 3uix.1

Crystal structure of Pim1 kinase in complex with small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x Q17: 2-{4-[(3-aminopropyl)amino]quinazolin-2-yl}phenol(Non-covalent)

Q17.1: 14 residues within 4Å: Chain A: L.17, F.22, V.25, A.38, K.40, E.62, L.93, E.94, R.95, D.101, E.144, L.147, I.158, D.159 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.17, A:F.22, A:F.22, A:F.22, A:V.25, A:A.38, A:K.40, A:R.95, A:L.147, A:I.158, A:D.159 Hydrogen bonds: A:D.101 Water bridges: A:D.159

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: F.174, R.178, W.185 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: G.23, V.42, E.43, R.46 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.231, S.233, S.234 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.231, A:S.234, A:S.234, A:S.234 Water bridges: A:R.231

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: F.228, Q.230, R.231, V.232, Q.237 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Q.230

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: F.103, I.106, D.143, D.207, G.211, D.212 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.143, A:D.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsuganezawa, K. et al., A novel pim-1 kinase inhibitor targeting residues that bind the substrate Peptide. J.Mol.Biol. (2012)

Release Date

2012-04-11

Peptides

Proto-oncogene serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proto-oncogene serine/threonine-protein kinase pim-1

Related Entries With Identical Sequence