SMTL ID : 3ujp.1

Structure of MntC protein at 2.7A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: H.66, H.131, E.197, N.218, D.272 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.66, A:H.131, A:E.197, A:E.197, A:D.272 MN.8: 4 residues within 4Å: Chain B: H.66, H.131, E.197, D.272 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.66, B:H.131, B:E.197, B:E.197, B:D.272 MN.9: 6 residues within 4Å: Chain C: H.66, H.131, E.197, A.199, N.218, D.272 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.66, C:H.131, C:E.197, C:E.197, C:D.272 MN.14: 5 residues within 4Å: Chain D: H.66, H.131, E.197, N.218, D.272 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.66, D:H.131, D:E.197, D:E.197, D:D.272 MN.21: 4 residues within 4Å: Chain E: H.66, H.131, E.197, D.272 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:H.66, E:H.131, E:E.197, E:E.197, E:D.272 MN.22: 6 residues within 4Å: Chain F: H.66, H.131, E.197, A.199, N.218, D.272 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:H.66, F:H.131, F:E.197, F:E.197, F:D.272

12 x ZN: ZINC ION(Non-covalent)

ZN.2: 1 residues within 4Å: Chain A: E.69 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.69 ZN.3: 2 residues within 4Å: Chain A: D.82 Chain E: R.137 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.82 ZN.4: 1 residues within 4Å: Chain A: E.96 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.96 ZN.5: 4 residues within 4Å: Chain A: D.51, K.52 Chain B: E.115 Chain D: E.30 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 2 interactions with chain A Metal complexes: D:E.30, B:E.115, A:D.51, A:D.51 ZN.10: 2 residues within 4Å: Chain C: E.112, Q.148 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:E.112, C:E.112 ZN.11: 3 residues within 4Å: Chain A: E.184 Chain B: D.104 Chain C: E.277 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Metal complexes: A:E.184, A:E.184, C:E.277 ZN.15: 1 residues within 4Å: Chain D: E.69 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.69 ZN.16: 2 residues within 4Å: Chain B: R.137 Chain D: D.82 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.82 ZN.17: 1 residues within 4Å: Chain D: E.96 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.96 ZN.18: 4 residues within 4Å: Chain A: E.30 Chain D: D.51, K.52 Chain E: E.115 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E, 2 interactions with chain D Metal complexes: A:E.30, E:E.115, D:D.51, D:D.51 ZN.23: 2 residues within 4Å: Chain F: E.112, Q.148 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:E.112, F:E.112 ZN.24: 3 residues within 4Å: Chain D: E.184 Chain E: D.104 Chain F: E.277 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F Metal complexes: D:E.184, D:E.184, F:E.277

8 x CAC: CACODYLATE ION(Non-covalent)

CAC.6: 2 residues within 4Å: Chain A: D.156 Chain E: R.191 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.191 CAC.7: 5 residues within 4Å: Chain A: D.286, E.289 Chain B: E.112, Q.148, E.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.286, A:D.286 CAC.12: 1 residues within 4Å: Chain C: E.170 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.170 CAC.13: 1 residues within 4Å: Chain C: E.184 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.184, C:E.184 CAC.19: 2 residues within 4Å: Chain B: R.191 Chain D: D.156 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.191 CAC.20: 5 residues within 4Å: Chain D: D.286, E.289 Chain E: E.112, Q.148, E.152 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.286, D:D.286, D:D.286 CAC.25: 1 residues within 4Å: Chain F: E.170 No protein-ligand interaction detected (PLIP) CAC.26: 1 residues within 4Å: Chain F: E.184 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.184, F:E.184, F:E.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kanteev, M. et al., Arginine 116 stabilizes the entrance to the metal ion-binding site of the MntC protein. Acta Crystallogr.,Sect.F (2013)

Release Date

2012-11-14

Peptides

Mn transporter subunit: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Mn transporter subunit