SMTL ID : 3uk2.1

The structure of Pantothenate synthetase from Burkholderia thailandensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 18 residues within 4Å: Chain A: P.28, T.29, M.30, H.34, G.36, H.37, L.40, Y.71, F.147, G.148, K.150, D.151, Q.154, E.175, T.176, V.177, L.185 Ligands: MLT.5 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:M.30, A:Y.71, A:G.148, A:D.151, A:D.151, A:Q.154, A:V.177, A:V.177, A:L.185 Water bridges: A:G.31, A:H.37, A:V.146 Salt bridges: A:H.37 AMP.8: 16 residues within 4Å: Chain B: P.28, T.29, M.30, H.34, G.36, H.37, L.40, F.147, G.148, K.150, D.151, E.175, T.176, V.177, L.185 Ligands: MLT.10 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:M.30, B:Y.71, B:G.148, B:D.151, B:D.151, B:Q.154, B:V.177, B:V.177, B:L.185 Water bridges: B:M.30, B:H.37, B:V.146 Salt bridges: B:H.37

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.247, E.282 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: K.149, E.175 Chain B: E.175 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: R.73 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.247, E.282 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: Q.238, K.271 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.238 EDO.6: 6 residues within 4Å: Chain A: M.30, Q.61, V.129, V.132, Q.154 Ligands: MLT.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.61, A:Q.154, A:Q.154 Water bridges: A:T.29, A:F.56

2 x MLT: D-MALATE(Non-covalent)

MLT.5: 9 residues within 4Å: Chain A: M.30, Q.61, R.122, F.125, D.151, Q.154, R.188 Ligands: AMP.1, EDO.6 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.125 Hydrogen bonds: A:Q.61, A:D.151, A:Q.154 Water bridges: A:R.122, A:R.122, A:R.122, A:K.150, A:K.150, A:D.151, A:D.151, A:R.188 Salt bridges: A:R.122, A:R.188 MLT.10: 8 residues within 4Å: Chain B: M.30, Q.61, R.122, F.125, D.151, Q.154, R.188 Ligands: AMP.8 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Q.61, B:Q.154, B:Q.154 Water bridges: B:R.122, B:R.122, B:R.122, B:D.151 Salt bridges: B:R.122, B:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baugh, L. et al., Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One (2013)

Release Date

2011-11-16

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase